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Reviews | 25 September 2019 | Open
Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change
The ISME Journal 14 , 1–9

Rights & permissionsfor article Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change . Opens in a new window.
Research | 22 May 2020 | Open
Drought and plant litter chemistry alter microbial gene expression and metabolite production
The ISME Journal 14 , 2236–2247

Rights & permissionsfor article Drought and plant litter chemistry alter microbial gene expression and metabolite production . Opens in a new window.
Research | 12 March 2020
Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil
The ISME Journal 14 , 1520–1532

Rights & permissionsfor article Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil . Opens in a new window.
Research | 18 February 2010
Microbial secondary succession in a chronosequence of chalk grasslands
The ISME Journal 4 , 711–715

Rights & permissionsfor article Microbial secondary succession in a chronosequence of chalk grasslands . Opens in a new window.
Research | 22 September 2011
Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
The ISME Journal 6 , 531–541

Rights & permissionsfor article Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows . Opens in a new window.
Research | 12 March 2009
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland
The ISME Journal 3 , 738–744

Rights & permissionsfor article Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland . Opens in a new window.
Research | 7 October 2010
Structure of the human gastric bacterial community in relation to Helicobacter pylori status
The ISME Journal 5 , 574–579

Rights & permissionsfor article Structure of the human gastric bacterial community in relation to Helicobacter pylori status . Opens in a new window.
Research | 17 January 2020
Niche differentiation is spatially and temporally regulated in the rhizosphere
- Erin E. Nuccio
- , Evan Starr
- , Ulas Karaoz
- , Eoin L. Brodie
- , Jizhong Zhou
- , Susannah G. Tringe
- , Rex R. Malmstrom
- , Tanja Woyke
- , Jillian F. Banfield
- , Mary K. Firestone
- & Jennifer Pett-Ridge
The ISME Journal 14 , 999–1014

Rights & permissionsfor article Niche differentiation is spatially and temporally regulated in the rhizosphere . Opens in a new window.
Research | 17 July 2019 | Open
Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer
- Brian J. Mailloux
- , Carol Kim
- , Tess Kichuk
- , Khue Nguyen
- , Chandler Precht
- , Shi Wang
- , Talia N. M. Jewell
- , Ulas Karaoz
- , Eoin L. Brodie
- , Kenneth H. Williams
- , Harry R. Beller
- & Bruce A. Buchholz
Scientific Reports 9 , 1–10

Rights & permissionsfor article Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer . Opens in a new window.
Research | 11 March 2019
Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle
- Javier A. Ceja-Navarro
- , Ulas Karaoz
- , Markus Bill
- , Zhao Hao
- , Richard A. White III
- , Abelardo Arellano
- , Leila Ramanculova
- , Timothy R. Filley
- , Timothy D. Berry
- , Mark E. Conrad
- , Meredith Blackwell
- , Carrie D. Nicora
- , Young-Mo Kim
- , Patrick N. Reardon
- , Mary S. Lipton
- , Joshua N. Adkins
- , Jennifer Pett-Ridge
- & Eoin L. Brodie
Nature Microbiology 4 , 864–875

Rights & permissionsfor article Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle . Opens in a new window.
Research | 19 March 2018
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
- Kateryna Zhalnina
- , Katherine B. Louie
- , Zhao Hao
- , Nasim Mansoori
- , Ulisses Nunes da Rocha
- , Shengjing Shi
- , Heejung Cho
- , Ulas Karaoz
- , Dominique Loqué
- , Benjamin P. Bowen
- , Mary K. Firestone
- , Trent R. Northen
- & Eoin L. Brodie
Nature Microbiology 3 , 470–480

Rights & permissionsfor article Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly . Opens in a new window.
Research | 14 October 2016 | Open
Microbial legacies alter decomposition in response to simulated global change
- Jennifer BH Martiny
- , Adam C Martiny
- , Claudia Weihe
- , Ying Lu
- , Renaud Berlemont
- , Eoin L Brodie
- , Michael L Goulden
- , Kathleen K Treseder
- & Steven D Allison
The ISME Journal 11 , 490–499

Rights & permissionsfor article Microbial legacies alter decomposition in response to simulated global change . Opens in a new window.
Research | 24 October 2016 | Open
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Nature Communications 7 , 1–11

Rights & permissionsfor article Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system . Opens in a new window.
Research | 4 March 2016 | Open
Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer
The ISME Journal 10 , 2106–2117

Rights & permissionsfor article Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer . Opens in a new window.
Research | 29 August 2013
Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus
The ISME Journal 8 , 6–18

Rights & permissionsfor article Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus . Opens in a new window.
Research | 14 July 2015 | Open
Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee
- Javier A. Ceja-Navarro
- , Fernando E. Vega
- , Ulas Karaoz
- , Zhao Hao
- , Stefan Jenkins
- , Hsiao Chien Lim
- , Petr Kosina
- , Francisco Infante
- , Trent R. Northen
- & Eoin L. Brodie
Nature Communications 6 , 1–9

Rights & permissionsfor article Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee . Opens in a new window.
Research | 22 September 2015 | Open
Exometabolite niche partitioning among sympatric soil bacteria
Nature Communications 6 , 1–9

Rights & permissionsfor article Exometabolite niche partitioning among sympatric soil bacteria . Opens in a new window.
Research | 20 June 2014
Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata
The ISME Journal 8 , 2411–2422

Rights & permissionsfor article Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata . Opens in a new window.
Research | 6 June 2013 | Open
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
- Lara Rajeev
- , Ulisses Nunes da Rocha
- , Niels Klitgord
- , Eric G Luning
- , Julian Fortney
- , Seth D Axen
- , Patrick M Shih
- , Nicholas J Bouskill
- , Benjamin P Bowen
- , Cheryl A Kerfeld
- , Ferran Garcia-Pichel
- , Eoin L Brodie
- , Trent R Northen
- & Aindrila Mukhopadhyay
The ISME Journal 7 , 2178–2191

Rights & permissionsfor article Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust . Opens in a new window.
Research | 31 July 2015 | Open
Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei
- Fernando E. Vega
- , Stuart M. Brown
- , Hao Chen
- , Eric Shen
- , Mridul B. Nair
- , Javier A. Ceja-Navarro
- , Eoin L. Brodie
- , Francisco Infante
- , Patrick F. Dowd
- & Arnab Pain
Scientific Reports 5 , 1–17

Rights & permissionsfor article Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei . Opens in a new window.
Research | 1 March 2012
Metagenomic analysis of a stable trichloroethene-degrading microbial community
The ISME Journal 6 , 1702–1714

Rights & permissionsfor article Metagenomic analysis of a stable trichloroethene-degrading microbial community . Opens in a new window.
Research | 4 September 2008
A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells
- Kelly C Wrighton
- , Peter Agbo
- , Falk Warnecke
- , Karrie A Weber
- , Eoin L Brodie
- , Todd Z DeSantis
- , Philip Hugenholtz
- , Gary L Andersen
- & John D Coates
The ISME Journal 2 , 1146–1156

Rights & permissionsfor article A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells . Opens in a new window.
Research | 8 December 2011
High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use
The ISME Journal 6 , 1210–1221

Rights & permissionsfor article High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use . Opens in a new window.
Research | 8 January 2009
Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata
The ISME Journal 3 , 512–521

Rights & permissionsfor article Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata . Opens in a new window.
Research | 13 January 2011
Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray
- Patrick K H Lee
- , Dan Cheng
- , Ping Hu
- , Kimberlee A West
- , Gregory J Dick
- , Eoin L Brodie
- , Gary L Andersen
- , Stephen H Zinder
- , Jianzhong He
- & Lisa Alvarez-Cohen
The ISME Journal 5 , 1014–1024

Rights & permissionsfor article Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray . Opens in a new window.
Research | 15 November 2012
Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought
- Nicholas J Bouskill
- , Hsiao Chien Lim
- , Sharon Borglin
- , Rohit Salve
- , Tana E Wood
- , Whendee L Silver
- & Eoin L Brodie
The ISME Journal 7 , 384–394

Rights & permissionsfor article Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought . Opens in a new window.
Research | 4 February 2010
Developmental microbial ecology of the crop of the folivorous hoatzin
The ISME Journal 4 , 611–620

Rights & permissionsfor article Developmental microbial ecology of the crop of the folivorous hoatzin . Opens in a new window.
Research | 13 November 2008
Selective progressive response of soil microbial community to wild oat roots
The ISME Journal 3 , 168–178

Rights & permissionsfor article Selective progressive response of soil microbial community to wild oat roots . Opens in a new window.
Research | 20 November 2008
Environmental microarray analyses of Antarctic soil microbial communities
The ISME Journal 3 , 340–351

Rights & permissionsfor article Environmental microarray analyses of Antarctic soil microbial communities . Opens in a new window.
Research | 7 June 2012
Influence of geogenic factors on microbial communities in metallogenic Australian soils
- Frank Reith
- , Joel Brugger
- , Carla M Zammit
- , Adrienne L Gregg
- , Katherine C Goldfarb
- , Gary L Andersen
- , Todd Z DeSantis
- , Yvette M Piceno
- , Eoin L Brodie
- , Zhenmei Lu
- , Zhili He
- , Jizhong Zhou
- & Steven A Wakelin
The ISME Journal 6 , 2107–2118

Rights & permissionsfor article Influence of geogenic factors on microbial communities in metallogenic Australian soils . Opens in a new window.

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Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

Drought and plant litter chemistry alter microbial gene expression and metabolite production

Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil

Microbial secondary succession in a chronosequence of chalk grasslands

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland

Structure of the human gastric bacterial community in relation to Helicobacter pylori status

Niche differentiation is spatially and temporally regulated in the rhizosphere

Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer

Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

Microbial legacies alter decomposition in response to simulated global change

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus

Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee

Exometabolite niche partitioning among sympatric soil bacteria

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei

Metagenomic analysis of a stable trichloroethene-degrading microbial community

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray

Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought

Developmental microbial ecology of the crop of the folivorous hoatzin

Selective progressive response of soil microbial community to wild oat roots

Environmental microarray analyses of Antarctic soil microbial communities

Influence of geogenic factors on microbial communities in metallogenic Australian soils

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