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Research | 25 September 2019 | Open
A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome
- Alessandra Riva
- , Orest Kuzyk
- , Erica Forsberg
- , Gary Siuzdak
- , Carina Pfann
- , Craig Herbold
- , Holger Daims
- , Alexander Loy
- , Benedikt Warth
- & David Berry
Nature Communications 10 , 1–11

Rights & permissionsfor article A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome . Opens in a new window.
Research | 21 February 2018 | Open
Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle
- Karthik Anantharaman
- , Bela Hausmann
- , Sean P. Jungbluth
- , Rose S. Kantor
- , Adi Lavy
- , Lesley A. Warren
- , Michael S. Rappé
- , Michael Pester
- , Alexander Loy
- , Brian C. Thomas
- & Jillian F. Banfield
The ISME Journal 12 , 1715–1728

Rights & permissionsfor article Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle . Opens in a new window.
Research | 23 February 2018 | Open
Peatland Acidobacteria with a dissimilatory sulfur metabolism
- Bela Hausmann
- , Claus Pelikan
- , Craig W. Herbold
- , Stephan Köstlbacher
- , Mads Albertsen
- , Stephanie A. Eichorst
- , Tijana Glavina del Rio
- , Martin Huemer
- , Per H. Nielsen
- , Thomas Rattei
- , Ulrich Stingl
- , Susannah G. Tringe
- , Daniela Trojan
- , Cecilia Wentrup
- , Dagmar Woebken
- , Michael Pester
- & Alexander Loy
The ISME Journal 12 , 1729–1742

Rights & permissionsfor article Peatland Acidobacteria with a dissimilatory sulfur metabolism . Opens in a new window.
Research | 21 November 2016
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium
- Sandrine Brugiroux
- , Markus Beutler
- , Carina Pfann
- , Debora Garzetti
- , Hans-Joachim Ruscheweyh
- , Diana Ring
- , Manuel Diehl
- , Simone Herp
- , Yvonne Lötscher
- , Saib Hussain
- , Boyke Bunk
- , Rüdiger Pukall
- , Daniel H. Huson
- , Philipp C. Münch
- , Alice C. McHardy
- , Kathy D. McCoy
- , Andrew J. Macpherson
- , Alexander Loy
- , Thomas Clavel
- , David Berry
- & Bärbel Stecher
Nature Microbiology 2 , 1–12

Rights & permissionsfor article Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium . Opens in a new window.
Research | 21 September 2016
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
- Simon Roux
- , Jennifer R. Brum
- , Bas E. Dutilh
- , Shinichi Sunagawa
- , Melissa B. Duhaime
- , Alexander Loy
- , Bonnie T. Poulos
- , Natalie Solonenko
- , Elena Lara
- , Julie Poulain
- , Stéphane Pesant
- , Stefanie Kandels-Lewis
- , Céline Dimier
- , Marc Picheral
- , Sarah Searson
- , Corinne Cruaud
- , Adriana Alberti
- , Carlos M. Duarte
- , Josep M. Gasol
- , Dolors Vaqué
- , Peer Bork
- , Silvia G. Acinas
- , Patrick Wincker
- & Matthew B. Sullivan
Nature 537 , 689–693

Rights & permissionsfor article Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses . Opens in a new window.
Research | 25 March 2016 | Open
Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms
The ISME Journal 10 , 2365–2375

Rights & permissionsfor article Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms . Opens in a new window.
Research | 11 September 2015
Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments
The ISME Journal 10 , 796–809

Rights & permissionsfor article Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments . Opens in a new window.
Research | 22 August 2014
Functionally relevant diversity of closely related Nitrospira in activated sludge
The ISME Journal 9 , 643–655

Rights & permissionsfor article Functionally relevant diversity of closely related Nitrospira in activated sludge . Opens in a new window.
Research | 10 May 2012
Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria
- Verona Vandieken
- , Michael Pester
- , Niko Finke
- , Jung-Ho Hyun
- , Michael W Friedrich
- , Alexander Loy
- & Bo Thamdrup
The ISME Journal 6 , 2078–2090

Rights & permissionsfor article Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria . Opens in a new window.
Research | 24 October 2014 | Open
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases
The ISME Journal 9 , 1152–1165

Rights & permissionsfor article Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases . Opens in a new window.
Research | 10 May 2012
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
- David Berry
- , Clarissa Schwab
- , Gabriel Milinovich
- , Jochen Reichert
- , Karim Ben Mahfoudh
- , Thomas Decker
- , Marion Engel
- , Brigitte Hai
- , Eva Hainzl
- , Susanne Heider
- , Lukas Kenner
- , Mathias Müller
- , Isabella Rauch
- , Birgit Strobl
- , Michael Wagner
- , Christa Schleper
- , Tim Urich
- & Alexander Loy
The ISME Journal 6 , 2091–2106

Rights & permissionsfor article Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis . Opens in a new window.
Research | 9 January 2014 | Open
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
- Clarissa Schwab
- , David Berry
- , Isabella Rauch
- , Ina Rennisch
- , Julia Ramesmayer
- , Eva Hainzl
- , Susanne Heider
- , Thomas Decker
- , Lukas Kenner
- , Mathias Müller
- , Birgit Strobl
- , Michael Wagner
- , Christa Schleper
- , Alexander Loy
- & Tim Urich
The ISME Journal 8 , 1101–1114

Rights & permissionsfor article Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery . Opens in a new window.
Research | 19 December 2013 | Open
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents
The ISME Journal 8 , 1153–1165

Rights & permissionsfor article Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents . Opens in a new window.
Research | 26 July 2012
Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years
The ISME Journal 7 , 72–84

Rights & permissionsfor article Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years . Opens in a new window.
Research | 10 June 2010
A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland
The ISME Journal 4 , 1591–1602

Rights & permissionsfor article A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland . Opens in a new window.
Research | 2 July 2009
Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge
The ISME Journal 3 , 1349–1364

Rights & permissionsfor article Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge . Opens in a new window.

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