Reviews & Analysis

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  • Sex-specific morphs exhibit phenotypes that differ between the sexes and typically include many different traits. Here, the author reviews recent genomic and transcriptomic studies that are yielding new insights into the evolutionary origin and development of sex-specific morphs in a wide range of animal species.

    • Judith E. Mank
    Review Article
  • In this Review, the authors discuss our latest understanding of extrachromosomal DNA (ecDNA), a type of circular DNA element commonly found in cancers. They discuss ecDNA properties, including oncogene amplifications and transcriptional hub formation, as well as opportunities for therapeutic interventions.

    • Eunhee Yi
    • Rocío Chamorro González
    • Roel G. W. Verhaak
    Review Article
  • Spatial omics methods enable the charting of cellular heterogeneity, complex tissue architectures and dynamic changes during development and disease. The authors review the developing landscape of in situ spatial transcriptome, genome and proteome technologies and highlight their impact on basic and translational research.

    • Jeffrey R. Moffitt
    • Emma Lundberg
    • Holger Heyn
    Review Article
  • In this Review, Preissl, Gaulton and Ren discuss single-cell epigenomic methods and data analysis tools, their readiness for profiling cis-regulatory elements in human tissues and the insight they can provide into dynamic, context-specific gene regulation.

    • Sebastian Preissl
    • Kyle J. Gaulton
    • Bing Ren
    Review Article
  • In this Perspective, the authors discuss how regulated alternative splicing can generate phenotypic diversity and outline emerging evidence that alternative splicing contributes to adaptation and species divergence.

    • Charlotte J. Wright
    • Christopher W. J. Smith
    • Chris D. Jiggins
    Perspective
  • Molecular measures of biological ageing based on high-throughput omics technologies are enabling the quantitative characterization of ageing. The authors review how epigenomic, transcriptomic, proteomic, metabolomic and other omics data can be harnessed using machine learning to build ‘ageing clocks’.

    • Jarod Rutledge
    • Hamilton Oh
    • Tony Wyss-Coray
    Review Article
  • In this Review, Kim and Kingston discuss the compositional and mechanistic diversity of Polycomb repressive complexes (PRCs) and how their context-dependent formation may be required for proper epigenetic regulation in development.

    • Jongmin J. Kim
    • Robert E. Kingston
    Review Article
  • tRNA function and gene expression profiles are dynamically regulated by post-transcriptional tRNA modifications. Here, Orellana et al. discuss the canonical role of tRNAs in mRNA translation, focusing on alterations in tRNA abundance or function implicated in human diseases.

    • Esteban A. Orellana
    • Elisabeth Siegal
    • Richard I. Gregory
    Review Article
  • Dupont and Wickström review the current understanding of how mechanical forces regulate chromatin state and gene expression and discuss the importance of this mechanosensitive gene regulation to physiology and disease.

    • Sirio Dupont
    • Sara A. Wickström
    Review Article
  • Commemorating the 200th birthday of Gregor Mendel, Kim Nasmyth reflects on Mendel’s life and legacy and how his work has shaped and defined the field of modern genetics.

    • Kim Nasmyth
    Perspective
  • Publicly available sequencing data can be used as external common controls for rare variant analyses but cautious sample ascertainment and processing is needed to avoid bias and confounding. The authors review opportunities and challenges for the robust use of common controls in genetic studies, including study design, infrastructure and quality control considerations.

    • Genevieve L. Wojcik
    • Jessica Murphy
    • Audrey E. Hendricks
    Review Article
  • In this Review, the authors give an overview of age-related changes to the methylation landscape and the statistical tools used to quantify them. They also discuss the evidence for longevity strategies that aim to counter these changes, and the candidate mechanistic causes of epigenetic ageing.

    • Kirsten Seale
    • Steve Horvath
    • Sarah Voisin
    Review Article
  • In this article, Niemi, Daly and Ganna discuss how large-scale genomics studies are providing a rapidly maturing understanding of the influence of host genetics on coronavirus disease 2019 (COVID-19) susceptibility and severity. They also describe the implications for identifying causal mechanisms of pathology and potential therapeutic opportunities.

    • Mari E. K. Niemi
    • Mark J. Daly
    • Andrea Ganna
    Review Article
  • Rackham and Filipovska review our current understanding of mitochondrial genome organization and expression, and discuss how new technologies and animal models are providing insights into how its mis-regulation leads to diseases of impaired energy conversion.

    • Oliver Rackham
    • Aleksandra Filipovska
    Review Article
  • In this Viewpoint, we asked six experts to give their opinions on the utility of polygenic scores, their strengths and limitations, and the remaining barriers that need to be overcome for their equitable use.

    • Iftikhar J. Kullo
    • Cathryn M. Lewis
    • Nilanjan Chatterjee
    Viewpoint
  • Histone post-translational modifications (PTMs) have been mainly regarded as instructing DNA-templated processes. In this Review, Gonzalo Millán-Zambrano and colleagues describe how histone PTMs both affect and are affected by these DNA processes and should be viewed as components of a complex genome-regulating network.

    • Gonzalo Millán-Zambrano
    • Adam Burton
    • Robert Schneider
    Review Article
  • This Review discusses the types of single and multiple human organ-on-a-chip (organ chip) microfluidic devices and their diverse applications for disease modelling, drug development and personalized medicine, as well as the challenges that must be overcome for organ chips to reach their full potential.

    • Donald E. Ingber
    Review Article