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PROBER: overcoming the high noise of DNA–protein interactions studies
PROBER is a fast and sensitive episome-based method to identify sequence-specific DNA-binding proteins from living cells using proximity proteomics. This method quantifies steady-state and inducible association of transcription factors and corresponding chromatin regulators to specific DNA sequences as well as binding quantitative trait loci present as a result of single nucleotide variants.
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Method of the Year 2021: Protein structure prediction
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Functional ultrasound localization microscopy reveals brain-wide neurovascular activity on a microscopic scale
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scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks
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Residue-wise local quality estimation for protein models from cryo-EM maps
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