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Original Article |
Annual community patterns are driven by seasonal switching between closely related marine bacteria
- Christopher S Ward
- , Cheuk-Man Yung
- , Katherine M Davis
- , Sara K Blinebry
- , Tiffany C Williams
- , Zackary I Johnson
- & Dana E Hunt
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Original Article |
Mixed transmission modes and dynamic genome evolution in an obligate animal–bacterial symbiosis
- Shelbi L Russell
- , Russell B Corbett-Detig
- & Colleen M Cavanaugh
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Original Article
| Open AccessSyntrophic linkage between predatory Carpediemonas and specific prokaryotic populations
- Emmo Hamann
- , Halina E Tegetmeyer
- , Dietmar Riedel
- , Sten Littmann
- , Soeren Ahmerkamp
- , Jianwei Chen
- , Philipp F Hach
- & Marc Strous
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Original Article
| Open AccessCultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system
- Laura A Sauder
- , Mads Albertsen
- , Katja Engel
- , Jasmin Schwarz
- , Per H Nielsen
- , Michael Wagner
- & Josh D Neufeld
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Original Article |
Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities
- Margaret F Romine
- , Dmitry A Rodionov
- , Yukari Maezato
- , Andrei L Osterman
- & William C Nelson
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Original Article |
Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars
- Jun Ye
- , Stephen D Joseph
- , Mukan Ji
- , Shaun Nielsen
- , David R G Mitchell
- , Scott Donne
- , Joseph Horvat
- , Jianli Wang
- , Paul Munroe
- & Torsten Thomas
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Original Article |
Soil microorganisms can overcome respiration inhibition by coupling intra- and extracellular metabolism: 13C metabolic tracing reveals the mechanisms
- Ezekiel K Bore
- , Carolin Apostel
- , Sara Halicki
- , Yakov Kuzyakov
- & Michaela A Dippold
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Original Article
| Open AccessSticking together: inter-species aggregation of bacteria isolated from iron snow is controlled by chemical signaling
- Jiro F Mori
- , Nico Ueberschaar
- , Shipeng Lu
- , Rebecca E Cooper
- , Georg Pohnert
- & Kirsten Küsel
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Original Article |
Archaea and bacteria mediate the effects of native species root loss on fungi during plant invasion
- Steven D Mamet
- , Eric G Lamb
- , Candace L Piper
- , Tristrom Winsley
- & Steven D Siciliano
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Original Article |
A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements
- Fanny E Hartmann
- , Andrea Sánchez-Vallet
- , Bruce A McDonald
- & Daniel Croll
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Original Article |
Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula
- Jeff S Bowman
- , Linda A Amaral-Zettler
- , Jeremy J Rich
- , Catherine M Luria
- & Hugh W Ducklow
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Original Article
| Open AccessPhylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats
- Meinhard Simon
- , Carmen Scheuner
- , Jan P Meier-Kolthoff
- , Thorsten Brinkhoff
- , Irene Wagner-Döbler
- , Marcus Ulbrich
- , Hans-Peter Klenk
- , Dietmar Schomburg
- , Jörn Petersen
- & Markus Göker
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Original Article
| Open AccessDiscovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats
- Dimitry Y Sorokin
- , Enzo Messina
- , Francesco Smedile
- , Pawel Roman
- , Jaap S Sinninghe Damsté
- , Sergio Ciordia
- , Maria Carmen Mena
- , Manuel Ferrer
- , Peter N Golyshin
- , Ilya V Kublanov
- , Nazar I Samarov
- , Stepan V Toshchakov
- , Violetta La Cono
- & Michail M Yakimov
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Original Article |
The evolution of no-cost resistance at sub-MIC concentrations of streptomycin in Streptomyces coelicolor
- Sanne Westhoff
- , Tim Marijn van Leeuwe
- , Omar Qachach
- , Zheren Zhang
- , Gilles Philippus van Wezel
- & Daniel Eric Rozen
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Original Article
| Open AccessImpacts of chemical gradients on microbial community structure
- Jianwei Chen
- , Anna Hanke
- , Halina E Tegetmeyer
- , Ines Kattelmann
- , Ritin Sharma
- , Emmo Hamann
- , Theresa Hargesheimer
- , Beate Kraft
- , Sabine Lenk
- , Jeanine S Geelhoed
- , Robert L Hettich
- & Marc Strous
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Original Article
| Open AccessDivergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome
- Francesco Rubino
- , Ciara Carberry
- , Sinéad M Waters
- , David Kenny
- , Matthew S McCabe
- & Christopher J Creevey
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Original Article |
Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands
- Julia Kyaschenko
- , Karina E Clemmensen
- , Andreas Hagenbo
- , Erik Karltun
- & Björn D Lindahl
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Original Article |
New insights into marine group III Euryarchaeota, from dark to light
- Jose M Haro-Moreno
- , Francisco Rodriguez-Valera
- , Purificación López-García
- , David Moreira
- & Ana-Belen Martin-Cuadrado
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Original Article |
Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches
- C S Lazar
- , B J Baker
- , K W Seitz
- & A P Teske
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Original Article |
Temperature is a key factor in Micromonas–virus interactions
- David Demory
- , Laure Arsenieff
- , Nathalie Simon
- , Christophe Six
- , Fabienne Rigaut-Jalabert
- , Dominique Marie
- , Pei Ge
- , Estelle Bigeard
- , Stéphan Jacquet
- , Antoine Sciandra
- , Olivier Bernard
- , Sophie Rabouille
- & Anne-Claire Baudoux
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Original Article
| Open AccessOn the ecosystemic network of saliva in healthy young adults
- Egija Zaura
- , Bernd W Brandt
- , Andrei Prodan
- , Maarten Joost Teixeira de Mattos
- , Sultan Imangaliyev
- , Jolanda Kool
- , Mark J Buijs
- , Ferry LPW Jagers
- , Nienke L Hennequin-Hoenderdos
- , Dagmar E Slot
- , Elena A Nicu
- , Maxim D Lagerweij
- , Marleen M Janus
- , Marcela M Fernandez-Gutierrez
- , Evgeni Levin
- , Bastiaan P Krom
- , Henk S Brand
- , Enno CI Veerman
- , Michiel Kleerebezem
- , Bruno G Loos
- , G A van der Weijden
- , Wim Crielaard
- & Bart JF Keijser
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Original Article |
The fitness costs and trade-off shapes associated with the exclusion of nine antibiotics by OmpF porin channels
- Katherine Phan
- & Thomas Ferenci
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Original Article |
An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil
- Masahito Hayatsu
- , Kanako Tago
- , Ikuo Uchiyama
- , Atsushi Toyoda
- , Yong Wang
- , Yumi Shimomura
- , Takashi Okubo
- , Futoshi Kurisu
- , Yuhei Hirono
- , Kunihiko Nonaka
- , Hiroko Akiyama
- , Takehiko Itoh
- & Hideto Takami
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Original Article |
Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring
- Laura Ward
- , Michael W Taylor
- , Jean F Power
- , Bradley J Scott
- , Ian R McDonald
- & Matthew B Stott
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Original Article |
Cheating fosters species co-existence in well-mixed bacterial communities
- Anne Leinweber
- , R Fredrik Inglis
- & Rolf Kümmerli
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Original Article |
Patterns of bacterial diversity in the marine planktonic particulate matter continuum
- Mireia Mestre
- , Encarna Borrull
- , M Montserrat Sala
- & Josep M Gasol
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Original Article |
Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents
- Sayaka Mino
- , Satoshi Nakagawa
- , Hiroko Makita
- , Tomohiro Toki
- , Junichi Miyazaki
- , Stefan M Sievert
- , Martin F Polz
- , Fumio Inagaki
- , Anne Godfroy
- , Shingo Kato
- , Hiromi Watanabe
- , Takuro Nunoura
- , Koichi Nakamura
- , Hiroyuki Imachi
- , Tomo-o Watsuji
- , Shigeaki Kojima
- , Ken Takai
- & Tomoo Sawabe
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Original Article
| Open AccessThe Pseudomonas putida T6SS is a plant warden against phytopathogens
- Patricia Bernal
- , Luke P Allsopp
- , Alain Filloux
- & María A Llamas
-
Original Article
| Open AccessBacteria isolated from lung modulate asthma susceptibility in mice
- Aude Remot
- , Delphyne Descamps
- , Marie-Louise Noordine
- , Abdelhak Boukadiri
- , Elliot Mathieu
- , Véronique Robert
- , Sabine Riffault
- , Bart Lambrecht
- , Philippe Langella
- , Hamida Hammad
- & Muriel Thomas
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Original Article
| Open AccessRedox potential as a master variable controlling pathways of metal reduction by Geobacter sulfurreducens
- Caleb E Levar
- , Colleen L Hoffman
- , Aubrey J Dunshee
- , Brandy M Toner
- & Daniel R Bond
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Original Article |
Experimental warming reveals positive feedbacks to climate change in the Eurasian Steppe
- Ximei Zhang
- , Eric R Johnston
- , Linghao Li
- , Konstantinos T Konstantinidis
- & Xingguo Han
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Original Article |
Modeling of soil nitrification responses to temperature reveals thermodynamic differences between ammonia-oxidizing activity of archaea and bacteria
- Anne E Taylor
- , Andrew T Giguere
- , Conor M Zoebelein
- , David D Myrold
- & Peter J Bottomley
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Original Article |
Regional synchrony in full-scale activated sludge bioreactors due to deterministic microbial community assembly
- James S Griffin
- & George F Wells
-
Original Article
| Open AccessFungal–bacterial dynamics and their contribution to terrigenous carbon turnover in relation to organic matter quality
- Jenny Fabian
- , Sanja Zlatanovic
- , Michael Mutz
- & Katrin Premke
-
Original Article
| Open AccessHelminth burden and ecological factors associated with alterations in wild host gastrointestinal microbiota
- Lindsay K Newbold
- , Sarah J Burthe
- , Anna E Oliver
- , Hyun S Gweon
- , Christopher J Barnes
- , Francis Daunt
- & Christopher J van der Gast
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Original Article
| Open AccessMicrobiota network and mathematic microbe mutualism in colostrum and mature milk collected in two different geographic areas: Italy versus Burundi
- Lorenzo Drago
- , Marco Toscano
- , Roberta De Grandi
- , Enzo Grossi
- , Ezio M Padovani
- & Diego G Peroni
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Original Article
| Open AccessConvergent patterns in the evolution of mealybug symbioses involving different intrabacterial symbionts
- Gitta Szabó
- , Frederik Schulz
- , Elena R Toenshoff
- , Jean-Marie Volland
- , Omri M Finkel
- , Shimshon Belkin
- & Matthias Horn
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Original Article |
Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection
- Li-Guan Li
- , Yu Xia
- & Tong Zhang
-
Original Article |
Phage-inducible islands in the Gram-positive cocci
- Roser Martínez-Rubio
- , Nuria Quiles-Puchalt
- , Miguel Martí
- , Suzanne Humphrey
- , Geeta Ram
- , Davida Smyth
- , John Chen
- , Richard P Novick
- & José R Penadés
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Original Article
| Open AccessNew roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11
- Lindsey M Solden
- , David W Hoyt
- , William B Collins
- , Johanna E Plank
- , Rebecca A Daly
- , Erik Hildebrand
- , Timothy J Beavers
- , Richard Wolfe
- , Carrie D Nicora
- , Sam O Purvine
- , Michelle Carstensen
- , Mary S Lipton
- , Donald E Spalinger
- , Jeffrey L Firkins
- , Barbara A Wolfe
- & Kelly C Wrighton
-
Original Article
| Open AccessPlantmediated horizontal transmission of Wolbachia between whiteflies
- Shao-Jian Li
- , Muhammad Z Ahmed
- , Ning Lv
- , Pei-Qiong Shi
- , Xing-Min Wang
- , Ji-Lei Huang
- & Bao-Li Qiu
-
Original Article |
Identification of the fitness determinants of budding yeast on a natural substrate
- Marie Filteau
- , Guillaume Charron
- & Christian R Landry
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Original Article |
Molecular insights into a dinoflagellate bloom
- Weida Gong
- , Jamie Browne
- , Nathan Hall
- , David Schruth
- , Hans Paerl
- & Adrian Marchetti
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Original Article
| Open AccessA family of interaction-adjusted indices of community similarity
- Thomas Sebastian Benedikt Schmidt
- , João Frederico Matias Rodrigues
- & Christian von Mering
-
Original Article
| Open AccessUse of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton
- Ryan W Paerl
- , Francois-Yves Bouget
- , Jean-Claude Lozano
- , Valérie Vergé
- , Philippe Schatt
- , Eric E Allen
- , Brian Palenik
- & Farooq Azam
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Original Article |
Coupled molecular and isotopic evidence for denitrifier controls over terrestrial nitrogen availability
- Erin F E Lennon
- & Benjamin Z Houlton
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Original Article |
Warming and nutrient enrichment in combination increase stochasticity and beta diversity of bacterioplankton assemblages across freshwater mesocosms
- Lijuan Ren
- , Dan He
- , Zhen Chen
- , Erik Jeppesen
- , Torben L Lauridsen
- , Martin Søndergaard
- , Zhengwen Liu
- & Qinglong L Wu
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Original Article |
Single-cell mass spectrometry reveals the importance of genetic diversity and plasticity for phenotypic variation in nitrogen-limited Chlamydomonas
- Jasmin Krismer
- , Manu Tamminen
- , Simone Fontana
- , Renato Zenobi
- & Anita Narwani
-
Original Article
| Open AccessMethylacidiphilum fumariolicum SolV, a thermoacidophilic ‘Knallgas’ methanotroph with both an oxygen-sensitive and -insensitive hydrogenase
- Sepehr Mohammadi
- , Arjan Pol
- , Theo A van Alen
- , Mike SM Jetten
- & Huub JM Op den Camp
