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Original Article
| Open AccessCyanobacterial photosynthesis under sulfidic conditions: insights from the isolate Leptolyngbya sp. strain hensonii
- Trinity L Hamilton
- , Judith M Klatt
- , Dirk de Beer
- & Jennifer L Macalady
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Original Article
| Open AccessRare symbionts may contribute to the resilience of coral–algal assemblages
- Maren Ziegler
- , Víctor M Eguíluz
- , Carlos M Duarte
- & Christian R Voolstra
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Original Article |
Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production
- Nicole Reichardt
- , Maren Vollmer
- , Grietje Holtrop
- , Freda M Farquharson
- , Daniel Wefers
- , Mirko Bunzel
- , Sylvia H Duncan
- , Janice E Drew
- , Lynda M Williams
- , Graeme Milligan
- , Thomas Preston
- , Douglas Morrison
- , Harry J Flint
- & Petra Louis
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Original Article
| Open AccessMicrobial life on a sand grain: from bulk sediment to single grains
- David Probandt
- , Thilo Eickhorst
- , Andreas Ellrott
- , Rudolf Amann
- & Katrin Knittel
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Original Article |
What intrinsic and extrinsic factors explain the stoichiometric diversity of aquatic heterotrophic bacteria?
- Casey M Godwin
- & James B Cotner
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Original Article |
Clonal expansion behind a marine diatom bloom
- Maria Valeria Ruggiero
- , Domenico D'Alelio
- , Maria Immacolata Ferrante
- , Mariano Santoro
- , Laura Vitale
- , Gabriele Procaccini
- & Marina Montresor
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Original Article |
Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments
- Zhe Lyu
- & Yahai Lu
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Original Article
| Open AccessPhage mobility is a core determinant of phage–bacteria coexistence in biofilms
- Matthew Simmons
- , Knut Drescher
- , Carey D Nadell
- & Vanni Bucci
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Original Article |
Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities
- Wenxue Wu
- , Hsiao-Pei Lu
- , Akash Sastri
- , Yi-Chun Yeh
- , Gwo-Ching Gong
- , Wen-Chen Chou
- & Chih-Hao Hsieh
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Original Article
| Open AccessThe bacterium Wolbachia exploits host innate immunity to establish a symbiotic relationship with the dengue vector mosquito Aedes aegypti
- Xiaoling Pan
- , Andrew Pike
- , Deepak Joshi
- , Guowu Bian
- , Michael J McFadden
- , Peng Lu
- , Xiao Liang
- , Fengrui Zhang
- , Alexander S Raikhel
- & Zhiyong Xi
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Original Article
| Open AccessCharacterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes
- Judith Villamor
- , María Dolores Ramos-Barbero
- , Pedro González-Torres
- , Toni Gabaldón
- , Ramón Rosselló-Móra
- , Inmaculada Meseguer
- , Manuel Martínez-García
- , Fernando Santos
- & Josefa Antón
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Original Article
| Open AccessA dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer
- Benjamin J Tully
- , C Geoff Wheat
- , Brain T Glazer
- & Julie A Huber
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Original Article |
Degradation of hydrogen peroxide at the ocean’s surface: the influence of the microbial community on the realized thermal niche of Prochlorococcus
- Lanying Ma
- , Benjamin C Calfee
- , J Jeffrey Morris
- , Zackary I Johnson
- & Erik R Zinser
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Original Article |
In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina
- Lars Behrendt
- , Jean-Baptiste Raina
- , Adrian Lutz
- , Witold Kot
- , Mads Albertsen
- , Per Halkjær-Nielsen
- , Søren J Sørensen
- , Anthony WD Larkum
- & Michael Kühl
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Original Article |
Electron carriers in microbial sulfate reduction inferred from experimental and environmental sulfur isotope fractionations
- Christine B Wenk
- , Boswell A Wing
- & Itay Halevy
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Original Article
| Open AccessChanges in bacterioplankton community structure during early lake ontogeny resulting from the retreat of the Greenland Ice Sheet
- Hannes Peter
- , Erik Jeppesen
- , Luc De Meester
- & Ruben Sommaruga
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Original Article |
The impact of elevated CO2 on Prochlorococcus and microbial interactions with ‘helper’ bacterium Alteromonas
- Gwenn MM Hennon
- , J Jeffrey Morris
- , Sheean T Haley
- , Erik R Zinser
- , Alexander R Durrant
- , Elizabeth Entwistle
- , Terje Dokland
- & Sonya T Dyhrman
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Original Article
| Open AccessRecurrent patterns of microdiversity in a temperate coastal marine environment
- Meghan Chafee
- , Antonio Fernàndez-Guerra
- , Pier Luigi Buttigieg
- , Gunnar Gerdts
- , A Murat Eren
- , Hanno Teeling
- & Rudolf I Amann
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Original Article
| Open AccessBacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere
- Özge Eyice
- , Nataliia Myronova
- , Arjan Pol
- , Ornella Carrión
- , Jonathan D Todd
- , Tom J Smith
- , Stephen J Gurman
- , Adam Cuthbertson
- , Sophie Mazard
- , Monique ASH Mennink-Kersten
- , Timothy DH Bugg
- , Karl Kristoffer Andersson
- , Andrew WB Johnston
- , Huub JM Op den Camp
- & Hendrik Schäfer
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Original Article |
The plant circadian clock influences rhizosphere community structure and function
- Charley J Hubbard
- , Marcus T Brock
- , Linda TA van Diepen
- , Loïs Maignien
- , Brent E Ewers
- & Cynthia Weinig
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Original Article |
Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations
- Wei Qin
- , Shady A Amin
- , Rachel A Lundeen
- , Katherine R Heal
- , Willm Martens-Habbena
- , Serdar Turkarslan
- , Hidetoshi Urakawa
- , Kyle C Costa
- , Erik L Hendrickson
- , Tony Wang
- , David AC Beck
- , Sonia M Tiquia-Arashiro
- , Fred Taub
- , Andrew D Holmes
- , Neeraja Vajrala
- , Paul M Berube
- , Todd M Lowe
- , James W Moffett
- , Allan H Devol
- , Nitin S Baliga
- , Daniel J Arp
- , Luis A Sayavedra-Soto
- , Murray Hackett
- , E Virginia Armbrust
- , Anitra E Ingalls
- & David A Stahl
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Original Article
| Open AccessGeometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale
- Pauline Bernardo
- , Tristan Charles-Dominique
- , Mohamed Barakat
- , Philippe Ortet
- , Emmanuel Fernandez
- , Denis Filloux
- , Penelope Hartnady
- , Tony A Rebelo
- , Stephen R Cousins
- , François Mesleard
- , Damien Cohez
- , Nicole Yavercovski
- , Arvind Varsani
- , Gordon W Harkins
- , Michel Peterschmitt
- , Carolyn M Malmstrom
- , Darren P Martin
- & Philippe Roumagnac
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Original Article |
Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar
- Kanto Razanamalala
- , Tantely Razafimbelo
- , Pierre-Alain Maron
- , Lionel Ranjard
- , Nicolas Chemidlin
- , Mélanie Lelièvre
- , Samuel Dequiedt
- , Volaniaina H Ramaroson
- , Claire Marsden
- , Thierry Becquer
- , Jean Trap
- , Eric Blanchart
- & Laetitia Bernard
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Original Article |
Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments
- Stephanie A Carr
- , Florence Schubotz
- , Robert B Dunbar
- , Christopher T Mills
- , Robert Dias
- , Roger E Summons
- & Kevin W Mandernack
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Original Article
| Open AccessAquatic urban ecology at the scale of a capital: community structure and interactions in street gutters
- Vincent Hervé
- , Boris Leroy
- , Albert Da Silva Pires
- & Pascal Jean Lopez
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Original Article
| Open AccessMicrobiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline
- Sandra Denman
- , James Doonan
- , Emma Ransom-Jones
- , Martin Broberg
- , Sarah Plummer
- , Susan Kirk
- , Kelly Scarlett
- , Andrew R Griffiths
- , Maciej Kaczmarek
- , Jack Forster
- , Andrew Peace
- , Peter N Golyshin
- , Francis Hassard
- , Nathan Brown
- , John G Kenny
- & James E McDonald
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Original Article |
Polymorphism of antibiotic-inactivating enzyme driven by ecology expands the environmental resistome
- Dae-Wi Kim
- , Cung Nawl Thawng
- , Jung-Hye Choi
- , Kihyun Lee
- & Chang-Jun Cha
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Original Article |
Bacterial secretion of D-arginine controls environmental microbial biodiversity
- Laura Alvarez
- , Alena Aliashkevich
- , Miguel A de Pedro
- & Felipe Cava
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Original Article
| Open AccessA population genomics approach shows widespread geographical distribution of cryptic genomic forms of the symbiotic fungus Rhizophagus irregularis
- Romain Savary
- , Frédéric G Masclaux
- , Tania Wyss
- , Germain Droh
- , Joaquim Cruz Corella
- , Ana Paula Machado
- , Joseph B Morton
- & Ian R Sanders
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Original Article |
Temporal dynamics of uncultured viruses: a new dimension in viral diversity
- Ksenia Arkhipova
- , Timofey Skvortsov
- , John P Quinn
- , John W McGrath
- , Christopher CR Allen
- , Bas E Dutilh
- , Yvonne McElarney
- & Leonid A Kulakov
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Original Article
| Open AccessCyanophage-encoded lipid desaturases: oceanic distribution, diversity and function
- Sheila Roitman
- , Ellen Hornung
- , José Flores-Uribe
- , Itai Sharon
- , Ivo Feussner
- & Oded Béjà
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Original Article |
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
- Stefan M Neuenschwander
- , Rohit Ghai
- , Jakob Pernthaler
- & Michaela M Salcher
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Original Article |
Influence of resistance breeding in common bean on rhizosphere microbiome composition and function
- Lucas William Mendes
- , Jos M Raaijmakers
- , Mattias de Hollander
- , Rodrigo Mendes
- & Siu Mui Tsai
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Original Article
| Open AccessGeobiological feedbacks and the evolution of thermoacidophiles
- Daniel R Colman
- , Saroj Poudel
- , Trinity L Hamilton
- , Jeff R Havig
- , Matthew J Selensky
- , Everett L Shock
- & Eric S Boyd
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Original Article |
Mycorrhizal fungi show regular community compositions in natural ecosystems
- Erik Verbruggen
- , Merlin Sheldrake
- , Luke D Bainard
- , Baodong Chen
- , Tobias Ceulemans
- , Johan De Gruyter
- & Maarten Van Geel
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Original Article |
Bacteria alone establish the chemical basis of the wood-fall chemosynthetic ecosystem in the deep-sea
- Dimitri Kalenitchenko
- , Nadine Le Bris
- , Laetitia Dadaglio
- , Erwan Peru
- , Arnaud Besserer
- & Pierre E Galand
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Original Article |
Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness
- Simone Fontana
- , Mridul Kanianthara Thomas
- , Mirela Moldoveanu
- , Piet Spaak
- & Francesco Pomati
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Original Article
| Open AccessMicrobial megacities fueled by methane oxidation in a mineral spring cave
- Clemens Karwautz
- , Günter Kus
- , Michael Stöckl
- , Thomas R Neu
- & Tillmann Lueders
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Original Article |
Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community
- Felix Goldschmidt
- , Roland R Regoes
- & David R Johnson
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Original Article |
Tremblaya phenacola PPER: an evolutionary beta-gammaproteobacterium collage
- Rosario Gil
- , Carlos Vargas-Chavez
- , Sergio López-Madrigal
- , Diego Santos-García
- , Amparo Latorre
- & Andrés Moya
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Original Article
| Open AccessDNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies
- Ryan M Ziels
- , Diana Z Sousa
- , H David Stensel
- & David A C Beck
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Original Article
| Open AccessExcess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton
- Anny Cárdenas
- , Matthew J Neave
- , Mohamed Fauzi Haroon
- , Claudia Pogoreutz
- , Nils Rädecker
- , Christian Wild
- , Astrid Gärdes
- & Christian R Voolstra
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Original Article |
Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs
- Bram Flahou
- , Mirko Rossi
- , Jaco Bakker
- , Jan AM Langermans
- , Edwin Heuvelman
- , Jay V Solnick
- , Miriam E Martin
- , Jani O’Rourke
- , Le Duc Ngoan
- , Nguyen Xuan Hoa
- , Masahiko Nakamura
- , Anders Øverby
- , Hidenori Matsui
- , Hiroyoshi Ota
- , Takehisa Matsumoto
- , Dennis L Foss
- , Laurice A Kopta
- , Oladipo Omotosho
- , Maria Pia Franciosini
- , Patrizia Casagrande Proietti
- , Aizhen Guo
- , Han Liu
- , Gabriela Borilova
- , Ana Paula Bracarense
- , Sara K Lindén
- , Sofie De Bruyckere
- , Guangzhi Zhang
- , Chloë De Witte
- , Annemieke Smet
- , Frank Pasmans
- , Richard Ducatelle
- , Jukka Corander
- & Freddy Haesebrouck
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Original Article |
Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment
- Kohei Ino
- , Alex W Hernsdorf
- , Uta Konno
- , Mariko Kouduka
- , Katsunori Yanagawa
- , Shingo Kato
- , Michinari Sunamura
- , Akinari Hirota
- , Yoko S Togo
- , Kazumasa Ito
- , Akari Fukuda
- , Teruki Iwatsuki
- , Takashi Mizuno
- , Daisuke D Komatsu
- , Urumu Tsunogai
- , Toyoho Ishimura
- , Yuki Amano
- , Brian C Thomas
- , Jillian F Banfield
- & Yohey Suzuki
-
Original Article |
Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms
- David JF Walker
- , Ramesh Y Adhikari
- , Dawn E Holmes
- , Joy E Ward
- , Trevor L Woodard
- , Kelly P Nevin
- & Derek R Lovley
-
Original Article
| Open AccessLarge-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome
- Francesco Beghini
- , Edoardo Pasolli
- , Tin Duy Truong
- , Lorenza Putignani
- , Simone M Cacciò
- & Nicola Segata
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Original Article |
Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life
- Christian Milani
- , Marta Mangifesta
- , Leonardo Mancabelli
- , Gabriele A Lugli
- , Kieran James
- , Sabrina Duranti
- , Francesca Turroni
- , Chiara Ferrario
- , Maria C Ossiprandi
- , Douwe van Sinderen
- & Marco Ventura
-
Original Article
| Open AccessPhysiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.
- Jiro F Mori
- , Jarrod J Scott
- , Kevin W Hager
- , Craig L Moyer
- , Kirsten Küsel
- & David Emerson
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Original Article |
Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes
- Yi Yang
- , Steven A Higgins
- , Jun Yan
- , Burcu Şimşir
- , Karuna Chourey
- , Ramsunder Iyer
- , Robert L Hettich
- , Brett Baldwin
- , Dora M Ogles
- & Frank E Löffler
