Collection 

Optogenetics

Optogenetics: a decade of illuminating biology

In 2005, a study from the Deisseroth lab published in Nature Neuroscience demonstrated precise and reliable activation of neurons expressing the light-sensitive microbial protein channelrhodopsin-2 in response to pulses of light. This was not the first attempt at controlling neuronal activity with light, but the properties of channelrhodopsin-2 set the stage for its wide adoption. Many neuroscientists have now enthusiastically embraced optogenetics, with long-held views definitively tested and new insights into the brain in both health and disease gained. The optogenetics tool box has rapidly expanded over the past decade, paving the way for experiments that would have once seemed impossible. The reach of optogenetics now extends beyond neuroscience, as the dream of fine-tuned control of cellular activity is not limited to those working on the nervous system.

In this Collection, we present a snapshot of how the field of optogenetics has progressed. While the research and commentaries highlighted in these pages provides only a snippet of this large and robust field, we hope that these articles provide a sense for the technological improvements and biological insights driving the community forward.

 

  • ChR2: Anniversary - The September 2015 issue of Nature Neuroscience celebrates the 10th anniversary of channelrhodopsin-2 in neurons and features articles from the first and senior authors of the original paper along with a Q&A where a number of scientists reflect on the impact of optogenetics.

  • News & Comments - Learn about the impact and reach of optogenetics in these news and commentary articles from Nature-branded journals.

  • Research - Enjoy an editorially curated selection of articles published in the Nature-branded journals over the past decade, highlighting both tools that were added to the optogenetic toolkit and key biological insights revealed with these approaches.

  • Protocols - Browse through an editorially curated selection of experimental protocols related to optogenetics work published in the Nature-branded journals and elsewhere over the past decade.

  • Video - Take a guided tour of optogenetics with Nature Video.

 

Publication timeline for microbial opsins and optogenetics over 45 years. Figure from Deisseroth, K. Optogenetics: 10 years of microbial opsins in neuroscience, September 2015 issue of Nature Neuroscience.

Publication timeline for microbial opsins and optogenetics over 45 years.

Browse through an editorially curated selection of experimental protocols related to optogenetics work published in the Nature-branded journals and elsewhere over the past decade.

 

Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures

Feng Zhang, Viviana Gradinaru, Antoine R Adamantidis, Remy Durand, Raag D Airan, Luis de Lecea & Karl Deisseroth

Nature Protocols, doi:10.1038/nprot.2009.226

Full Text | PDF

 

Targeted optogenetic stimulation and recording of neurons in vivo using cell-type-specific expression of Channelrhodopsin-2

Jessica A Cardin, Marie Carlén, Konstantinos Meletis, Ulf Knoblich, Feng Zhang, Karl Deisseroth, Li-Huei Tsai & Christopher I Moore

Nature Protocols, doi:10.1038/nprot.2009.228

Full Text | PDF

 

Construction of implantable optical fibers for long-term optogenetic manipulation of neural circuits

Dennis R Sparta, Alice M Stamatakis, Jana L Phillips, Nanna Hovelsø, Ruud van Zessen & Garret D Stuber

Nature Protocols, doi:10.1038/nprot.2011.413

Full Text | PDF

 

A multispectral optical illumination system with precise spatiotemporal control for the manipulation of optogenetic reagents

Jeffrey N Stirman, Matthew M Crane, Steven J Husson, Alexander Gottschalk & Hang Lu

Nature Protocols, doi:10.1038/nprot.2011.433

Full Text | PDF

 

High-resolution optical control of spatiotemporal neuronal activity patterns in zebrafish using a digital micromirror device

Peixin Zhu, Otto Fajardo, Jennifer Shum, Yan-Ping Zhang Schärer & Rainer W Friedrich

Nature Protocols, doi:10.1038/nprot.2012.072

Full Text | PDF

 

Closed-loop optogenetic intervention in mice

Caren Armstrong, Esther Krook-Magnuson, Mikko Oijala & Ivan Soltesz

Nature Protocols, doi:10.1038/nprot.2013.080

Full Text | PDF

 

Fabrication and application of flexible, multimodal light-emitting devices for wireless optogenetics

Jordan G McCall, Tae-il Kim, Gunchul Shin, Xian Huang, Yei Hwan Jung, Ream Al-Hasani, Fiorenzo G Omenetto, Michael R Bruchas & John A Rogers

Nature Protocols, doi:10.1038/nprot.2013.158

Full Text | PDF

 

An optogenetics- and imaging-assisted simultaneous multiple patch-clamp recording system for decoding complex neural circuits

Guangfu Wang, Daniel R Wyskiel, Weiguo Yang, Yiqing Wang, Lana C Milbern, Txomin Lalanne, Xiaolong Jiang, Ying Shen, Qian-Quan Sun & J Julius Zhu

Nature Protocols, doi:10.1038/nprot.2015.019

Full Text | PDF