Collection |

Open data in the COVID-19 pandemic

This collection presents a series of rapidly evolving resources that aggregate and bring cohesion to the massive volume of data being generated in the COVID-19 crisis. Data are compiled from a variety of sources, exposing the nuance of state interventions deployed to contain the outbreak, identifying changes in the mobility of populations during the epidemic and synthesizing data on virus-host biology. These works also highlight groundbreaking efforts to drive rapid scientific progress on this urgent topic through broad collaboration, open data sharing and citizen science.

Public health & social measures

Measurement(s) Preventive Intervention • Public Health Technology Type(s) natural language processing objective • Artificial Intelligence Sample Characteristic - Environment anthropogenic environment Sample Characteristic - Location Global
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13999484

Data Descriptor | Open Access | | Scientific Data

Measurement(s) prevention and control intervention • Intervention or Procedure • rigidity of public health interventions to face COVID-19 • intensity of economic interventions to face COVID-19 Technology Type(s) digital curation • Data Collection Factor Type(s) rigidity of public health interventions • intensity of economic interventions Sample Characteristic - Location Global
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13042139

Data Descriptor | Open Access | | Scientific Data

Measurement(s) time at medical intervention • medical intervention Technology Type(s) digital curation • content analysis strategy of existing information sources Factor Type(s) non-pharmaceutical intervention • date Sample Characteristic - Location global
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12668792

Data Descriptor | Open Access | | Scientific Data

Measurement(s) Public Health • Preventive Intervention Technology Type(s) digital curation Factor Type(s) country • date Sample Characteristic - Location global
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12724058

Data Descriptor | Open Access | | Scientific Data

Epidemiology & mobility

Measurement(s) Proximity • Movement • Attitudes and beliefs relating to COVID-19 • Indoor environment measures Technology Type(s) Ultra-wideband technology • Camera Device • questionnaire • environment sensor Factor Type(s) Walking direction • Wearing of face masks • Proximity buzzer Sample Characteristic - Organism Homo sapiens Sample Characteristic - Environment public exhibition Sample Characteristic - Location Kingdom of the Netherlands
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14312180

Data Descriptor | Open Access | | Scientific Data

Measurement(s) COVID-19 Cases • COVID-19 Mortalities • COVID-19 vaccination Technology Type(s) digital curation Sample Characteristic - Organism Homo sapiens Sample Characteristic - Location Canada
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14331311

Data Descriptor | Open Access | | Scientific Data

Measurement(s) SARS coronavirus • Case Technology Type(s) digital curation Factor Type(s) country • NUTS region • day Sample Characteristic - Organism Severe acute respiratory syndrome-related coronavirus Sample Characteristic - Location Belgium • Croatia • Kingdom of Denmark • England • Estonia • Finland • French Republic • Germany • Greece • Hungary • Republic of Ireland • Italy • Latvia • Kingdom of the Netherlands • Kingdom of Norway • Portuguese Republic • Romania • Scotland • Slovenia • Kingdom of Spain • Sweden • Austria • Czech Republic • Poland • Slovak Republic • Switzerland
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14748702

Data Descriptor | Open Access | | Scientific Data

Measurement(s) Epidemiological Factors • exposure • Demographics • travel history • Quarantine • Symptom Onset • Symptom • Hospitalization • Viral Infection Technology Type(s) digital curation • manual coding Sample Characteristic - Organism Homo sapiens Sample Characteristic - Location China
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13567553

Data Descriptor | Open Access | | Scientific Data

Measurement(s) mobility • Interaction Technology Type(s) GPS navigation system • machine learning Factor Type(s) geographic scale • temporal interval • geographic location • spatiotemporal region Sample Characteristic - Location United States of America
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13135085

Data Descriptor | Open Access | | Scientific Data

Measurement(s) Test • Extent Technology Type(s) digital curation Factor Type(s) country • temporal interval Sample Characteristic - Organism Coronaviridae Sample Characteristic - Location global
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12924755

Data Descriptor | Open Access | | Scientific Data

Measurement(s) mobility Technology Type(s) GPS navigation system Factor Type(s) temporal interval Sample Characteristic - Organism Homo sapiens Sample Characteristic - Location Italy
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12515256

Data Descriptor | Open Access | | Scientific Data

Measurement(s) coronavirus infectious disease • Viral Epidemiology Technology Type(s) digital curation Factor Type(s) geolocation • date • travel history • age • sex Sample Characteristic - Organism Homo sapiens • SARS-CoV-2 • Betacoronavirus
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.11974344

Data Descriptor | Open Access | | Scientific Data

Biomedical resources

Measurement(s) Cough Technology Type(s) Microphone Device Factor Type(s) COVID-19 status • location • age • gender • respiratory condition Sample Characteristic - Organism Homo sapiens
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14377019

Data Descriptor | Open Access | | Scientific Data

Measurement(s) Low Dose Computed Tomography of the Chest • viral infectious disease Technology Type(s) digital curation • image processing technique Factor Type(s) sex • gender • age group • weight • clinical characteristics • covid-19 RT-PCR result • follow-up data Sample Characteristic - Organism Homo sapiens
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13583015

Data Descriptor | Open Access | | Scientific Data

Measurement(s) cytotoxicity • killing by virus of host cell Technology Type(s) bright-field microscopy Factor Type(s) concentration • incubation time Sample Characteristic - Organism Homo sapiens
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13562570

Data Descriptor | Open Access | | Scientific Data

Measurement(s) COVID-19 image features • chest • viral genome Technology Type(s) Radiograph • computed tomography • whole genome sequencing Factor Type(s) COVID-19 diagnosis Sample Characteristic - Organism Homo sapiens • SARS-CoV-2 Sample Characteristic - Environment rural area Sample Characteristic - Location United States of America
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12980795

Data Descriptor | Open Access | | Scientific Data

Efficient response to the pandemic through the mobilization of the larger scientific community is challenged by the limited reusability of the available primary genomic data. Here, the Genomic Standards Consortium board highlights the essential need for contextual genomic data FAIRness, for empowering key data-driven biological questions.

Comment | Open Access | | Scientific Data

Psychological impact

Measurement(s) Emotional Well-being • sleep quality • worry measurment • social behavior • Stress • self rated health • Alcohol Consumption • Affective Symptoms • chronotype measurement • Anxiety • Personality Trait • Demographic Data • empathy measurement • COVID-19 Related Memory Questions • self-regulation • Emotion • behavioural disinhibition measurement • response to uncertainty Technology Type(s) Survey • Pittsburgh Sleep Quality Index • Generalized Anxiety Disorder - 7 Questionnaire • Perceived Stress Scale • Patient Health Questionnaire - 9 Item • Positive and Negative Affect Schedule • Ultra Short Munich Chronotype Questionnaire • Cognitive emotion regulation questionnaire (CERQ) • Liebowitz Social Anxiety Scale (LSAS) • Self-Report of Personality • Reduced Morningness Eveningness Questionnaire (MEQ) • Toronto Empathy Questionnaire • Brief Self-Control Scale • Emotion Regulation Questionnaire (ERQ) • Short Impulsive Behavior Scale • Intolerance of Uncertainty Scale Sample Characteristic - Organism Homo sapiens Sample Characteristic - Environment first-order administrative region • human dwelling Sample Characteristic - Location United States of America • Global
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14069348

Data Descriptor | Open Access | | Scientific Data

Measurement(s) psychological measurement • anxiety-related behavior trait • Stress • response to • Isolation • loneliness measurement • Emotional Distress Technology Type(s) Survey Factor Type(s) geographic location • language • age of participant • responses to the Coronavirus pandemic Sample Characteristic - Organism Homo sapiens Sample Characteristic - Location global
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13251776

Data Descriptor | Open Access | | Scientific Data

Measurement(s) risk perception Technology Type(s) survey method Factor Type(s) experience • preparedness • knowledge • age • sex • education • income • occupation • political orientation • region of residence Sample Characteristic - Organism Homo sapiens Sample Characteristic - Location Italy • Sweden
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.13213832

Data Descriptor | Open Access | | Scientific Data

Measurement(s) Stress • socio-demographic data • psychological distress • loneliness measurement • social network analysis • Lifestyle Technology Type(s) survey method Factor Type(s) sex • age Sample Characteristic - Organism Homo sapiens Sample Characteristic - Environment mild lockdown Sample Characteristic - Location Japan
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12996998

Data Descriptor | Open Access | | Scientific Data

Measurement(s) Emotion • arousal domain measurement • mood change measurement Technology Type(s) questionnaire Factor Type(s) emotion dynamics during lockdown Sample Characteristic – Organism Homo sapiens Sample Characteristic – Location Kingdom of Spain
Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12948677

Data Descriptor | Open Access | | Scientific Data