Global climate change is likely to constrain low latitude range edges across many taxa and habitats. Such is the case for NE Atlantic marine macroalgal forests, important ecosystems whose main structuring species is the annual kelp Saccorhiza polyschides. We coupled ecological niche modelling with simulations of potential dispersal and delayed development stages to infer the major forces shaping range edges and to predict their dynamics. Models indicated that the southern limit is set by high winter temperatures above the physiological tolerance of overwintering microscopic stages and reduced upwelling during recruitment. The best range predictions were achieved assuming low spatial dispersal (5 km) and delayed stages up to two years (temporal dispersal). Reconstructing distributions through time indicated losses of ~30% from 1986 to 2014, restricting S. polyschides to upwelling regions at the southern edge. Future predictions further restrict populations to a unique refugium in northwestern Iberia. Losses were dependent on the emissions scenario, with the most drastic one shifting ~38% of the current distribution by 2100. Such distributional changes might not be rescued by dispersal in space or time (as shown for the recent past) and are expected to drive major biodiversity loss and changes in ecosystem functioning.
Recent climate change has produced several shifts in the distributions and abundances of species1. Climate projections suggest further potential for range shifts and may become one of the most important drivers of biodiversity loss2. This is particularly obvious at the low latitude range edges, where small variations beyond the peripheral niche may lead to extinction of local populations3.
Maintenance of ecosystem function will likely depend on the persistence of structuring species such as kelps4, here defined as large brown algae that can form marine forests and have alternating macroscopic and microscopic generations. These species create complex habitats that provide resources, shelter and nursery grounds for many marine organisms5. While kelp forests are naturally resilient systems, the ongoing warming of the oceans is shifting their distribution in many regions5,6, a process that may severely reduce essential habitats and unbalance important trophic interactions for numerous species.
Understanding the processes driving distributional changes of marine habitat forming species and predicting their biological responses to future climate variability is therefore not only a central subject in ecology, but also in conservation management. Many studies have used ecological niche modelling (ENM) to address such emerging issues7,8,9. These models are deeply rooted in the climatic niche theory, benefiting from a straightforward translation into a wide range of statistical methods, linking species occurrence data with environmental gradients to infer spatiotemporal patterns of distributions10.
Environmental factors like nutrients and light availability, seawater temperatures and wave action are well known drivers shaping the distribution and abundance of marine species at multiple spatial and temporal scales11. However, because kelps display a complex heteromorphic life cycle that includes a diploid macroscopic sporophyte and a haploid microscopic gametophyte, understanding the responses of this particular ecological group to climate variability can be a challenging task because the environment may act differently on each life stage, and the effects on one stage can affect the abundance of the subsequent one12,13. The ability to detect such specific responses within the global context is highly dependent on the use of fine-scale environmental data (resolution below tens of kilometres), mostly because the rates of change are far more complex than the simple rise or fall of averaged environmental predictors, with many locations displaying unique trends both spatially and seasonally14.
The vulnerability of species to climate change is further determined by their ability to migrate to extant suitable habitats15. For sessile marine species, migration is primarily mediated through propagule dispersal, which varies dramatically among species. However, most reconstructions of species ranges dichotomize dispersal as either unlimited or non-existent. This may lead to flawed estimations of the potential use of available habitats because species either use all suitable climatic space (unlimited dispersal scenario) or are unable to track change (no dispersal) and experience local extinctions whenever conditions fall outside tolerance limits10. In the same way, the ability of species to persist locally (e.g., as cryptic stages) during periods of unfavourable conditions is not usually considered, resulting in the underestimation of local persistence15. Acknowledging these processes is important for reconstructing kelp distributions because they have limited dispersal16,17 and some of their microscopic life stages may be able to persist during environmental conditions that are unfavourable to the macroscopic phase18.
A good model system to understand the processes driving range shifts and to predict the consequences of future climate changes is the Atlantic coast along the Iberian Peninsula and northern Africa. This region, hereafter designated Iberia-Morocco, is an important temperate biogeographic transition zone where a considerable number of marine species reach their cold and warm distributional limits19. Furthermore, this region is among the most affected by climate change20 and empirical evidence has confirmed that many ecosystem-structuring species have contracted ranges there21,22,23,24, with potential cascading consequences for the associated communities. One such species is Saccorhiza polyschides (Lightfoot) Batters, an important kelp in NE Atlantic waters, and a main canopy-building species in Iberia-Morocco6,21,25. It has undergone local extinctions and bottlenecks6 but the causes and magnitude of extinctions in this broad region have not been addressed.
Here we use regression and simulation techniques to (1) investigate the biologically meaningful factors shaping the range edge of S. polyschides, (2) examine the relationship between interannual climate variability and range loss, and (3) estimate persistence and population turnover. These challenging questions were addressed by modelling the ecological niche of S. polyschides with fine-scale environmental data, and by reconstructing range dynamics for the period 1986–2100 using simulations of potential dispersal and arrested development of microscopic life stages.
Along the Iberia-Morocco region, the presence and absence of S. polyschides was recorded during 197 coastal surveys (retrieving 129 unique gridded cells for the 5 years of field surveys). This dataset was enhanced with 312 historical records compiled from the available literature (198 unique gridded cells since 1986; Supplementary Figure S1, Supplementary Table S1).
Factors shaping the range edge of Saccorhiza polyschides
The transferrable models using data from 2010 and 2012 explained most of the spatial variation of S. polyschides (mean deviance: 0.19 ± 0.02) and allowed predicting suitable habitats with minimum areas (0.48 ± 0.02 mean proportion of total area predicted) while retaining high sensitivity (true presence rate) scores >0.9. The most important predictors included in the final ensemble were the number of consecutive winter and spring days with temperatures above 18 °C (15.82% ± 0.82 and 15.72% ± 0.85 contribution, respectively; Fig. 1; Supplementary Table S2), and the maximum winter temperatures (13.61% ± 0.82). The consecutive spring days with favourable upwelling conditions (8.44% ± 0.47; Fig. 1), the maximum winter waves and the consecutive spring days with waves above 3 m were also included in the final ensemble, although the latter two with small contribution to the models (0.39% ± 0.35 and 0.25% ± 0.38, respectively; Supplementary Table S2).
Simulations showed that a maximum dispersal distance of 5 km per year and a maximum latency period of 2 years (gametophytes) produced the highest marginal value in True Skill Statistics (TSS; Fig. 2), an index considering both sensitivity and specificity (true absence rate), and ranging between −1 to +1 (TSS > 0.8 indicate an excellent agreement between modelled and observed records26). Using these specific parameters, the TSS of our predictions increased 0.13 units from a reference point of 0.79 for no dispersal and no latency period. The reconstructions made with increasing dispersal distances and latency periods decreased TSS to 0.65 and 0.63, respectively (Fig. 2); thus, further analysis and discussion will focus mainly on the most accurate reconstruction of S. polyschides distribution.
The range edge of S. polyschides
By integrating the best dispersal and latency parameters (D = 5 km; L = 2 year) the reconstruction of distributions produced an excellent accuracy26, both when validated with all distributional records (n = 509; TSS: 0.92; sensitivity: 0.96; specificity: 0.97) and with the independent dataset prior to 2010 (Fig. 3; n = 323; sensitivities >0.90; specificities: >0.92). This allowed verifying that from 1986 to 2014S. polyschides had its widest distribution from the Bay of Biscay southwards to Lagos and in western Morocco (Fig. 4b), but during this period, kelp forests displayed a general decreasing trend, with a set of major contractions in the years 1990, 1996, 1998, 2000, 2004, 2007 and 2011 (Fig. 5a). While some of these were followed by putative recolonisations leading to no net change (e.g., 1996, 1998 and 2007), the years 1990, 2000, 2004 and 2011 were particularly severe for S. polyschides, producing permanent distribution losses of ~30%, when compared to a reference point of 13360 km2 for 1986 (Fig. 5a). These losses were most evident on the shores of northern Spain, southern Portugal and western Morocco (Fig. 4b), setting distributional limits similar to present ones (i.e., from Cabo de Peñas - ROI1 - to Carrapateira - ROI2 - and in western Morocco; Fig. 4a; 9766 km2 predicted area in 2014). The reconstruction of distributions predicted further range shifts in the near future. Using the Representative Concentration Pathway (RCP) 2.6, a scenario where greenhouse gas emissions are largely reduced over time, the losses were ~21% from 2014 onwards, with major breaks in 2017, 2036 and 2057 (Fig. 5a), restricting distributions to northwestern Iberia (Fig. 4c,d). The scenario RCP8.5, characterized by increasing gas emissions over time, predicted breaks in 2033, 2057, 2068 and from 2082 onwards (Fig. 5a). This scenario also restricts kelp forests to northwestern Iberia (Fig. 4e,f), although with losses of ~38% (6043 km2 in 2100) when compared to 2014. Despite more losses over the long term, the forecasts using RCP8.5 predicted a larger distribution in the first 19 years, leading to ~9% more kelp in RCP8.5 than RCP2.6 for the period 2015–2033 (8741 km2 ± 399 and 9619 km2 ± 398, respectively; Fig. 5a), spread between southwestern Portugal and western Morocco (Fig. 4c,e).
This study inferred the major environmental forces shaping the distribution of an important habitat forming species at its southern latitudinal range edge. It also predicted significant range losses during the recent past and for future scenarios of climate change, and demonstrated the feasibility of using a complex life cycle approach for the reconstruction of species’ distributions, along with the integration of potential dispersal and delayed development phases. It further allowed contradicting the general message associating range shifts with increasing temperature overpassing lethal limits27. By modelling distributions using environmental predictors with detailed spatial and temporal resolution (daily data), it allowed identifying novel effects that would be missed at a coarse scale. Namely, the years with recruitment failure and subsequent absence of adults were explained by: 1) the number of consecutive days with temperatures above the physiological tolerance of microscopic stages (i.e., gametophytes and young sporophytes), and 2) low nutrients during spring, associated with higher temperatures and poor upwelling. This study also showed evidence for temporal dispersal mediated by microscopic stages, which may maintain population sizes during unfavourable climate conditions. Such complexity of seasonal effects acting on different life history stages produced a more realistic simulation of inter-annual range shifting28 and would likely pass unnoticed with more simplistic modelling approaches.
Niche models corroborate empirical studies showing that the demography of this kelp is mainly determined at the gametophyte and young sporophyte stages during winter and spring12,29. In particular, the number of consecutive winter days with temperatures above 18 °C had the largest effect on the models’ response. During the winter season, fertilization of the female gametophyte is perhaps the most vulnerable phase of the life cycle of S. polyschides, having reduced fertility if exposed to temperatures above ~18 °C25. Extreme temperatures also determine the actual survival of gametophytes during this season, however with a higher critical threshold of 23 °C30. Such temperatures are not uncommon in winter throughout Iberia-Morocco, with some sites experiencing up to 129 days above 18 °C and maximum temperatures above 25 °C (Fig. 1). Whenever these thresholds are surpassed, the viability of microscopic stages, and therefore population sizes for following years, might be compromised and result in local extinctions, as those that have been documented by recent observations6,21,23,25.
Spring temperatures above 23 °C can also be detrimental for S. polyschides, particularly for the growth of young sporophytes25,31. However, our models discarded the effect of such extreme temperatures (average contribution <1%) and placed emphasis on the role of nutrients for microscopic stages to resume new cohorts32,33 (as shown for the southern Californian populations of Macrocystis pyrifera34). This was supported by the large effect of consecutive spring days with temperatures above 18 °C, the threshold at which the Iberia-Morocco region starts to be nutrient depleted (Nitrates and Phosphates; Supplementary Figure S2). The additional contribution of consecutive spring days with favourable upwelling conditions further emphasizes the central role of nutrients to the recruitment of S. polyschides at its southern range edge. In fact, the important role of nutrients for this species was previously suggested35, with nutrients rather than temperature explaining the overwintering of sporophytes in Brittany but not in Portugal. If recruitment fails due to unfavourable conditions, the continuity of population sizes can only rely on microscopic stages able to arrest development for additional periods of time.
The models further showed that compared to temperature and upwelling conditions, disturbance from waves play a small role in defining the range edge of S. polyschides, probably because waves primarily affect changes in biomass11,36 rather than explaining the complete loss of populations, as tested in the binomial models. Other variables not included in the models can further influence the demography of this species. For instance, low salinity (<9 PSS) and irradiance thresholds (<10–30 lux) inhibit the growth of S. polyschides37,38. However, the spatial scale of our models, composed by coastal cells of ~5 km, misses enough resolution to include the hyposaline regions of Iberia-Morocco (e.g., large estuaries and coastal lagoons) and to discriminate between coastal depths, therefore coastal cells containing presence data also include deeper areas where irradiance is limiting39. Photoperiodic responses such as winter irradiance limiting the development of new sporophytes38 could also be neglected in our modelling framework as these mechanisms mediate phenology only and not the inter-annual variability of recruitment.
The simulations testing different dispersal thresholds supported the hypothesis that S. polyschides has a limited degree of dispersal. The estimate of 5 km per year is in line with studies of Macrocystis pyrifera that showed dispersal in scales of a couple of kilometers16,17. In addition, this distance seems reasonable considering that most spores of the kelps Macrocystis pyrifera and Pterygophora californica stop swimming after ~24 h40. Despite this, one can’t discard the likely effect of large-scale dispersal mediated by floating rafts of kelp. These events certainly must have occurred when distant habitats such as offshore seamounts were firstly colonized by S. polyschides6,7, although they must be very uncommon since the spores released by rafts have a very low probability of reaching suitable rocky habitats in adequate densities to allow an effective colonization17, as fertilization is dependent upon the proximity of male and female gametophytes41.
The inferred latency period of microscopic stages was two years, meaning that populations of S. polyschides may be allowed to persist for longer than the natural cycle between two consecutive generations of sporophytes, a hypothesis that has been suggested by empirical records6. Most of what is known about the longevity of these stages is derived from laboratory experiments, with empirical evidence from culturing demonstrating that they last for several years42,43. Field evidence for the Iberian Peninsula demonstrated the existence of delayed development stages on, at least, the order of months18, and surveys performed in western Iberia6 revealed local extinctions followed by fast recolonizations that could be explained by delayed microscopic stages triggered by favourable environmental conditions (also hypothesised by other studies25). If these cryptic stages can actually persist for more than one year, as inferred by our simulations, they would allow the co-existence of multiple cohorts of this annual species and rescue populations whenever unfavourable conditions halt recruitment.
Compared to our study, niche modelling often focuses on a single life stage of a species (e.g., macroscopic sporophytes), neglecting the role of life stages with distinct traits44. By integrating the complete life-cycle of S. polyschides, together with spatial and temporal dispersal, the predictive capacity of our models was strongly improved (Supplementary Figure S3). This approach yielded excellent agreement26 between the predicted distribution and the actual distributional records (presences and absences), both for the full temporal span of hindcasts and outside the training window of the models (i.e., independent dataset prior to 2010; Fig. 3). Furthermore, because distributions were reconstructed from a starting point in the past, erroneous hindcasts should propagate until more recent times, which was not the case. The predictions for the present largely matched the known distribution of the species (as inferred from our field surveys and other studies24,25), with the only missing occurrences in Tarifa - Strait of Gibraltar. This is a particular region benefiting from unique environmental conditions allowing populations to persist in deep waters7,39. Specifically, the low light attenuation of Mediterranean waters allows sufficient irradiance at depths >25 m7,39, where the SST sensor OSTIA fails to detect suitable temperatures. Also, the permanent upwelling located in this region of the Gibraltar Strait provides favourable nutrient-rich conditions not found anywhere else throughout the surrounding areas39. Despite this, predictions largely matched the known distribution and allowed inferring the decline of ~30% of kelp forests from 1986 to 2014. The recent warming of sea surface waters is a well-documented trend for Iberia-Morocco14, and the predicted range shifts were coincident with the heat waves of 1988–1990, 1996–1998, 2003–2004 and 2006–200721,22,45. These results highlight that climate change is paced by such discrete extreme warming episodes and range shifts often occur abruptly, as biological tipping-points are exceeded46. Some particular years showed poor recruitment (e.g., 1996–1998 and 2006–2007), however our results suggest that permanent losses occur mainly when unfavourable conditions arise on successive years, supporting the hypothesis that delayed stages may hold on populations sizes between consecutive generations of sporophytes.
The inferred distributional losses in northern Spain (eastwards to Cabo the Penãs) and southern Portugal (Lagos) are corroborated by our field surveys and additional studies6,24,25, which systematically fail to detect the species throughout these coastlines, despite its occurrence there in the past (Fig. 4a). These range shifts pushed the current distribution to the northwestern Iberian Peninsula, and discontinuous occurrences along southwestern Portugal and western Morocco, but only in upwelling regions47. There, cold and nutrient-rich upwelled waters form climatic refugia that buffer the overall warming trend observed in Iberia-Morocco47. It has been suggested that throughout the world upwelling is becoming more persistent, longer and stronger48. This may well be the case for southwestern Portugal and western Morocco48, where kelps prevail despite local extinctions and reduced abundances6. However, the seasonality and intensity of the northwest Iberian upwelling system decreased recently49. This was not linked to extinctions in our study, nor in other studies25, but throughout the extant populations of northwestern Iberia, individuals live fewer months and a smaller proportion became reproductive when compared to the populations studied there before the 2000s25.
The rapid range shifts predicted for S. polyschides, corroborated by our field evidence and other studies, suggest niche conservatism, which is not uncommon for marine species50. This suggests low plasticity or adaptive capacity to extreme climate conditions, as species that experienced warming-driven range shifts in the past are most likely to shift ranges when exposed to future warming events. Many species are predicted to shift ranges throughout the Iberia-Morocco region during the 21st century8,9. Our projections are in agreement with these expectations, however the use of different greenhouse gas emissions led to different predicted consequences. In the most optimistic scenario (RCP2.6), S. polyschides is predicted to decrease ~21% from 2014 to 2057, with extant populations confined to the refugium located on the northwest of the Iberia Peninsula. The predictions made with increasing emissions over time (RCP8.5) were more severe (as in other studies8,9), with losses of up to 38% by the end of the century. Such disparities between climate scenarios were only evident from 2068 onwards, and the more aggressive scenario predicted less loss in the first 19 years of forecasts. This is explained by the RCP8.5 data variability, which assumes more favourable winter conditions during 2017–2024 than the RCP2.6 (Supplementary Figure S4). This is plausible, as climate scenarios strongly diverge from 2050 onwards51. The RCP2.6 has a peak of radiative forcing (difference of energy absorbed and radiated by the Earth51) by 2050 followed by a decline until 210052, whereas RCP8.5 represents the upper range in the literature, predicting higher radiative forcing by the end of the century53. However, one can’t discard that RCP8.5 may underestimate the warming in those initial years, as documented for the drying and cooling of Iberia-Morocco during the Last Glacial Maximum (20,000 years before present) in some AOGCM simulations54. If so, our models might over-predict distributions with RCP8.5, meaning that the loss of kelp forests could happen earlier and more severely, as some populations of southwest Portugal and western Morocco would not persist as predicted. Because forecasts had their starting point in the present, which was accurately predicted, the putative sources of bias are mostly rooted on the inherent uncertainties of climate simulations51.
In the future, dispersal might not be a suitable escape mechanism for populations to persist or recover along the Iberia-Morocco coastlines since there are important barriers halting migration. Our results estimate that the limited dispersal potential of S. polyschides (5 km per year) is not sufficient to connect and thereby recover the populations inhabiting the western continental edges of the Iberian Peninsula and Morocco, within their generational time frame. This inference is supported by genetic data that shows lack of interpopulation connectivity in that specific region7. The loss of most range edge marine forests of kelp seems plausible under future climate scenarios, particularly in the long term, and the consequences that will arise should be considered. Both scenarios used in this study suggest that this will occur for populations in the north and southwest portions of the Iberian Peninsula and throughout western Morocco. Such extinctions would erode unique genetic lineages6,7 thereby reducing the overall gene pool of this species and compromising its evolutionary potential3. In this context, deep offshore reefs may act as buffers to climate change, by allowing persistence of unique genetic groups in greater depths, away from the warmer surface trends7. This might be the case of the genetic diversity of western Morocco, that might prevail in one of such cryptic refugium (Gorringe offshore seamount), but no further evidence about a genetic refugial role of offshore deep sites has been found throughout the distributional range of S. polyschides6,7. Along side with genetic erosion, the demise of a main canopy-building species in the coastlines of Iberia-Morocco is expected to cause major changes in the whole ecosystem, particularly in the overall biomass and diversity of the numerous associated species4. Additionally, the loss of canopy cover releases important resources on the reef surface (e.g., light and space55) facilitating colonization by more warm-tolerant species56. This tends to lead to less structurally diverse habitats composed by crustose and foliose turf algae, characteristic of warmer or impacted and degraded ecosystems57. In the light of climate induced range shifts, our broad scale field surveys coupled with the predictions performed through time represent a unique baseline to reassess in the future the range edge distribution of Atlantic marine forests. This will allow the assessment of the hypotheses and predictions raised in this study, particularly whether range shifts for S. polyschides might not be rescued by dispersal, potentially driving major biodiversity loss and changes in ecosystem functioning.
Focal species and study region
The present study focused on the annual kelp S. polyschides, along the coastlines of the Iberian Peninsula and northern Africa, from the Bay of Biscay to southern Morocco, and throughout the Spanish, Moroccan and Algerian Mediterranean coasts (~5000 Km). This region is an appropriate model to address our questions because the populations of S. polyschides display unique phenology there21,35 and their ecological niche in this region may differ from that of populations inhabiting the centre of their distribution. Beyond Iberia-Morocco, seasonal S. polyschides only occurs on the offshore banks of Gorringe, Alboran and Messina7; these are particular deep habitats not affected by climate variability as shallow coastal waters, thus not useful for the goals of this study.
Data on species occurrences and climate
Presence and absence records of S. polyschides were gathered by means of SCUBA diving and snorkelling in the summers of 2003, 2008, 2010, 2011 and 2012 (Supplementary Table S1). These surveys were performed on rocky reef sites by swimming randomly for periods up to 60 min. To avoid false absences, if no kelp was found within a site, at least one other survey was performed within 1 km from the initial one. Historical records (since 1986) were also collated from literature (Supplementary Table S1). New and historical data were gridded into 0.05° cells (~5 km) to match the resolution of the environmental predictors (see below).
Multiple seasonal environmental predictors were generated for modelling purposes (Supplementary Table S5). These predictors reflected factors putatively affecting the physiology of S. polyschides (Sea Surface Temperature - SST), disturbances that impact its habitat (Significant Wave Height - SWH) and essential resources (Coastal Upwelling Index - CUI - as a proxy for nutrients). Seasons were defined as “spring” (months = MAMJ), “winter” (months = ONDJF) and “previous summer” (months = JAS) to match the life cycle of this species and its unique phenology throughout Iberia-Morocco: the populations of S. polyschides in this region display a sharp recruitment of sporophytes in spring, followed by a peek of high abundances throughout summer; the adults release spores in late summer and die in the autumn; settled spores produce gametophytes that after fertilization persist until favourable spring conditions to resume recruitment35.
To hindcast distributions, daily data on SST and SWH were collated from the Operational Sea Surface Temperature and Sea Ice Analysis (OSTIA58) and the European Centre for Medium-Range Weather Forecasts (ECMWF59), respectively. Upwelling indices were produced with daily data from the ECMWF following a standardized implementation60. This approach uses the eastward and northward components of surface wind speed to estimate Ekman’s offshore transport of water masses (m3/s). Deep nutrient rich waters are expected to start flowing toward the surface at Coastal Upwelling Index (CUI) >16 m3/s61. To forecast distributions, SST and wind speed data were collated on a daily basis from two Atmospheric-Ocean General Circulation Models (AOGCM): the Community Climate System Model (CCSM4) and the Model for Interdisciplinary Research on Climate (MIROC5). This was performed under two Representative Concentration Pathways (RCP51): the RCP2.6, where greenhouse gas emissions are largely reduced over time, and the RCP8.5, characterized by increasing gas emissions over time. Because SWH data were not available on AOGCMs, forecasts did not consider this variable. However, this limitation was likely not important to model results because the range edge of S. polyschides was largely explained by SST and CUI alone (see Results). All environmental predictors were gridded to a common resolution of 0.05° using bilinear interpolation.
Ecological Niche Modeling
The ENM approach used followed the methods of other studies, which take advantage of a cross-validation procedure to capture the most transferrable (i.e., temporal and/or spatial cross-applicability) and parsimonious set of environmental predictors among numerous candidates7,8,9. To this end, we adopted Boosted Regression Trees (BRT62), a machine-learning method with the ability to fit non-linear relationships with complex interactions among predictors.
Because S. polyschides may be absent from some sites due to factors other than niche availability (e.g., dispersal limitations), the BRT models were developed with pseudo-absences outside the species’ ecological space rather than the absences recorded in field surveys7,8,9. This information was obtained from a habitat suitability surface produced with Mahalanobis distance, which related the normalized environmental predictors with the presence records63. The same amount of pseudo-absences as the presence records were extracted from cells with probability scores less than or equal to 0.264. These were randomly chosen from environmentally dissimilar cells identified with K-means clustering on the normalized predictors, and using the number of presence records as the k clustering parameter65.
Cross-validation was performed non-randomly on temporally distinct datasets, by iteratively training models in a given year and testing predictive performances on another year (as largely recommend66). The years used were 2010 and 2012 because these stand for the most complete surveys (Supplementary Table S1). All combinations of environmental predictors showing no signs of strong correlation (Spearman’s R < |0.8|; Supplementary Figure S5) were used to train BRT models. This allowed reducing over-parameterization, which can narrow niche estimates, and provided a basis to discuss the individual effect of predictors67. Each single model using BRT is dependent on a set of parameters (number of trees; learning rate, tree complexity and bag fraction), which when carefully identified increase the level of generality and reduce overfitting62. These parameters were determined by testing a range of number of trees (100 to 10000, step 50), learning rates (0.01, 0.005, 0.001) and tree complexities (from 1 up to the total number of predictors in a model) in a 10-fold cross-validation performed in the training dataset, using lowest deviance as a measure of success7,8,9,62. A bag fraction of 0.5 (i.e., the proportion of data used at each iteration) was used as default value because it produces optimal binomial responses62. To further reduce the potential for overfitting, predictors were forced to produce monotonic responses, negative (for SST and SWH) or positive (for CUI).
The potential of each combination of predictors for transferability was verified using the information of presence records only68. To this end, the Minimum Predicted Area criterion (MPA) was used to measure the proportion of predicted area with suitable habitat in the test dataset69, when applying a threshold retrieving at least 0.9 sensitivity. MPA ranged from zero to one, with lower values producing smaller predicted areas. Accordingly, the models with higher potential for transferability were identified as those producing the lowest MPA in the cross-validation iterations69. The relative contribution of each predictor to the distribution of S. polyschides was assessed by determining the mean reduction in MPA when adding a given predictor to all alternative models. In this step, the mean MPA scores were transformed as 1 - MPA and rescaled to sum 100, so that higher relative scores would stand for stronger contributions.
The range edge of S. polyschides through time
The suitable habitats of S. polyschides in Iberia-Morocco (probability of occurrence) were predicted by merging (mean function) the responses of the most transferable models, when assigned on a yearly basis to the environment conditions of the period 1986–2100. Because the models only fitted non-correlated predictors, it was possible to discard predictors with lower predictive performances among highly correlated pairs. Since ensemble modelling is also useful for uncertain datasets, forecasts merged the different outcomes from CCSM4 and MIROC57,8,9.
To reconstruct the distribution of this species through time, the suitable habitats were converted to binary responses (presence or absence) based on a MPA threshold. The accuracy of predicted distributions was assessed with TSS using all distributional records (including absences) both in space and time. In this process, we tested three different types of reconstructions: (1) no dispersal, with cells experiencing permanent absence in time whenever the habitat becomes unsuitable, (2) unlimited dispersal, with presences and absences as a direct function of habitat suitability, and (3) specific estimates of potential dispersal distance and arrested development (latency) of microscopic stages. Since there is no robust information about these metrics, we simulated their effect on the marginal score of TSS. Multiple reconstructions of the distribution were generated with increasing dispersal distances (D; 1 to 500 km, step 1 km) and latency periods (L; 1 to 5 years, step 1 year), starting from a state of no dispersal and no latency. Because no reference point was available about past distributions, the simulations started with the earliest predicted distribution (year 1986). From this state on, for every i cell predicted with suitable habitat at a given t year, a presence in i at t was assigned if one of the following conditions were met: (1) there was a previous presence in i cell at any t − L year; (2) there was a rescue effect from neighbouring cells with presence records at t − 1 year, distancing equal or less D km from i. Distances between pairs of cells were determined using the shortest path along the coast. The simulations retrieved 2500 matrices, and the best combination of D and L was found as the one retrieving the highest marginal value of TSS. The implementation of these thresholds will be propagated in the reconstruction of this species’ distribution through time. While spatial dispersal (D) allows the (re) colonization of formerly unsuitable habitats, temporal dispersal (L; i.e., delayed stages) enables local persistence whenever unsuitable habitats arise.
The area covered by kelp along the Iberia-Morocco coastline was estimated through time. The final accuracy of predictions was inferred with TSS, sensitivity and specificity using all distributional records (i.e., 1986–2014) and independently per year. This latter approach provides an independent framework to evaluate the accuracy of the hindcasting, particularly when considering the historical records outside the training window of the models (i.e., independent dataset prior to 2010). Persistence, extinction and extinctions followed by recolonizations were mapped for the periods 1986–2014, 2015–2050 and 2051–2100.
All analyses described were conducted in R70 using packages adehabitat, dismo, doParallel, gbm, geoR, ncdf4, parallel, raster, rgdal, sp, SDMTools.
How to cite this article: Assis, J. et al. Major shifts at the range edge of marine forests: the combined effects of climate changes and limited dispersal. Sci. Rep. 7, 44348; doi: 10.1038/srep44348 (2017).
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This study was supported by Electricity of Portugal (Fundo EDP para a Biodiversidade) and FCT - Portuguese Science Foundation (projects PTDC/MAR-EST/6053/2014 and EXTANT-EXCL/AAG-GLO/0661/2012, and postdoctoral fellowship to JA SFRH/BPD/111003/2015).
The authors declare no competing financial interests.
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Assis, J., Berecibar, E., Claro, B. et al. Major shifts at the range edge of marine forests: the combined effects of climate changes and limited dispersal. Sci Rep 7, 44348 (2017). https://doi.org/10.1038/srep44348
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