Insects are key components of urban ecological networks and are greatly impacted by anthropogenic activities. Yet, few studies have examined how insect functional groups respond to changes to urban vegetation associated with different management actions. We investigated the response of herbivorous and predatory heteropteran bugs to differences in vegetation structure and diversity in golf courses, gardens and parks. We assessed how the species richness of these groups varied amongst green space types, and the effect of vegetation volume and plant diversity on trophic- and species-specific occupancy. We found that golf courses sustain higher species richness of herbivores and predators than parks and gardens. At the trophic- and species-specific levels, herbivores and predators show strong positive responses to vegetation volume. The effect of plant diversity, however, is distinctly species-specific, with species showing both positive and negative responses. Our findings further suggest that high occupancy of bugs is obtained in green spaces with specific combinations of vegetation structure and diversity. The challenge for managers is to boost green space conservation value through actions promoting synergistic combinations of vegetation structure and diversity. Tackling this conservation challenge could provide enormous benefits for other elements of urban ecological networks and people that live in cities.
Urbanisation has caused, and is forecasted to increasingly cause, global detrimental impacts on biodiversity1,2. Yet, a mounting body of evidence suggests that urban environments can still support substantial levels of native biodiversity including many threatened species3. Cities therefore provide unique opportunities to proactively implement actions and strategies to conserve biodiversity. These actions may also have significant benefits for people, as biodiverse urban ecosystems are known to improve the health and wellbeing of city-dwellers4. However, successful conservation and management strategies relevant to a range of functionally different taxa are yet to be devised, and much guidance is still required for conservation practice to realise the opportunities that biodiverse urban areas could provide.
Insects are a key component of urban biodiversity5, and the ecological functions they perform translate into a wide array of ecosystem services6,7 as well as disservices8,9. In forest ecosystems, Ewers et al.10 showed that the contribution of insect and other invertebrate taxa to litter decomposition, seed predation and invertebrate predation was halved following logging because of a significant decrease in invertebrate abundance. Furthermore, insects play a key ecological role as prey for other taxa - especially insectivorous birds, reptiles and microbats. In urban ecosystems, it is poorly understood how insect diversity is affected by changes to vegetation during and after urbanisation. Investigating how key functional groups, such as herbivores and predators11, respond to changes in vegetation structure and diversity may help develop this understanding12 and help determine what strategies may best conserve these functional groups and the ecosystem services they provide.
Heteropteran bugs (Hemiptera: Heteroptera; henceforth bugs for brevity) comprise a hyperdiverse monophyletic clade of insects distributed worldwide13,14. Bugs present a wide range of feeding strategies from strict phytophagy and zoophagy to omnivory15,16, making them a suitable model taxon to better understand responses of insect herbivores and predators to gradients in urban vegetation structure and diversity. Bugs also provide important ecosystem services. For example, generalist predators such as damsel, pirate and assassin bugs (families: Nabidae, Anthocoridae and Reduviidae) are biological control agents in forest and agricultural ecosystems15,17. Finally, some herbivorous bug species are highly host plant specific. For example, 60% of mirid bugs (family Miridae) are associated exclusively with a single host plant and less than 20% occur in more than two host plants18. The availability of suitable host plants is therefore an a priori requirement for the occurrence of bug herbivore specialists within a given ecosystem.
The positive effects of complex vegetation structure and high plant diversity on insect diversity have been previously documented19,20,21, and specifically bug diversity22. Importantly however, the positive effects of complex vegetation structure and high plant diversity may not be general across all insect taxa and functional groups23, highlighting the relevance of incorporating trophic- and species-specific responses when investigating the generality of ecological patterns across different ecosystem types.
A mounting body of evidence indicates that managing vegetation structure and plant diversity in urban environments can have positive effects on biodiversity at the landscape level24,25. Yet, in urban landscapes it is not known which vegetation management actions can promote animal biodiversity in different green space types. Urban green spaces, such as golf courses, public parks and residential gardens, play a crucial role in urban biodiversity conservation26,27,28,29,30. These urban green spaces, however, are often unintentionally managed and contain a range of both early- and late-succession vegetation features (e.g. turf grass lawns, patches of unmanaged vegetation, trees, shrubs). Understanding how this diversity of habitat structures impacts insects and other animal taxa will inform potential management practices that could promote biodiversity.
In this study we assess the impact of different vegetation management practices on herbivorous and predatory insects by examining heteropteran bug responses to variation in vegetation structure and plant diversity in different urban green space types (golf courses, residential gardens, public parks). Specifically, we use multi-species site occupancy models under a Bayesian mode of inference to:
Assess how species richness of herbivorous and predatory bugs varies amongst green space types; and
quantify the magnitude of the effect of vegetation volume and plant species diversity on bug trophic (i.e., herbivorous or predatory) and species-specific occupancy.
We also examined the role that habitat area has on bug diversity by assessing the fit of the data to the power function of species-area relationships31. The results suggest that area had a positive effect on bug diversity, but was not the key driver of diversity. Instead, vegetation volume and plant diversity across habitat types were the major factors in predicting bug diversity.
The survey yielded 91 bug species (75 herbivores and 16 predators) from 19 families (Tables S1–S4). This represents approximately 20% of the total bug gamma diversity estimated for Victoria, Australia32, and agrees well with the bug species richness found in other temperate urban areas33. As many as 98% of all species recorded were native to the study area. Only two species, the green stink bug Nezara viridula and the Azalea lacebug Stephanitis pyrioides, were non-native to Australia. Of the total number of species, 38 were unique to golf courses whilst only six and eleven were unique to parks and gardens, respectively. Eleven herbivores were observed in all green space types, with the most ubiquitous species being the alydid Mutusca brevicornis, occurring in 54% of all plots. By contrast, only two predators were observed in all green space types, with the most ubiquitous species being the Pacific damselbug Nabis kinbergii, occurring in 27% of all plots. An assessment of sample completeness showed that further sampling would have resulted in little increase in sample coverage (Fig. S1).
Area (A) had a positive effect on bug species richness (S), with model estimates indicating that the mean fit of our data to the power function of the species-area relationship followed:
The mean estimate of the intercept parameter c (0.26) was associated with a wide 95% credible interval (henceforth CI95%) that ranged from 0.08 to 0.64, whereas the mean estimate of the slope parameter z (0.32) showed a more accurate CI95% that ranged from 0.23 to 0.40. The observed vs. estimated fit of our data to the power function of the species-area relationship was at best intermediate (r2 = 0.43; Fig. S2). There were more observed bug species than those expected by the modelled species-area relationship in approximately 40% of golf course and park sites, while in as much as 90% of garden sites there were less observed species than those predicted by the model.
Green space type model
The mean probability of occurrence for bugs was high in all green space types, with species estimated to occur at 62% to 86% of sites. By contrast, the mean probability of detection was low, with species estimated to be observed only 4% to 13% of the times when they were present. These trends were consistent across all green space types, as evidenced by the uncertainty associated with the mean responses (Table 1).
The mean bug species richness was substantially higher in golf courses (57 spp.) than in parks (21 spp.) and gardens (24 spp.). The golf course estimate was associated with a CI95% that did not overlap the CIs95% of either parks or gardens (Table 1). The mean estimated species richness for herbivores was higher in golf courses (48 spp.) than in parks (18 spp.) and gardens (19 spp.) (Fig. 1), with the golf course CI95% not overlapping the CIs95% of either parks or gardens (Table 1). Mean estimated species richness for predators was higher in golf courses (9 spp.) than in parks (3 spp.) and gardens (5 spp.) (Fig. 1), with the golf course CI95% not overlapping the parks CI95% but slightly overlapping the gardens CI95% (Table 2). Posterior estimates for the mean, standard deviation and CI95% for the species-specific probabilities of occurrence and detection for each green space are given in Table S1.
The mean probabilities of occurrence for herbivorous and predatory bugs were moderately high, with herbivores and predators estimated to occur on average at 56% and 71% of sites, respectively. In contrast, mean probabilities of detection were low for both trophic groups, with bug species estimated to be observed on average only 3% (predators) to 4% (herbivores) of the times when they were present. These trends were consistent across all green space types, as evidenced by the uncertainty associated with the mean responses (Table 2).
The species-specific probabilities of occurrence for herbivores varied considerably, with individual species estimated to occur in as few as 9% of sites (Cuspicona sp. 2) and in as many as 96% of sites (Nysius caledoniae). In contrast, the species-specific probabilities of occurrence for predators varied only moderately, with individual species estimated to occur between 54% (Dicrotelus prolixus) and 94% (N. kinbergii) of sites.
The species-specific probabilities of detection for herbivores also varied considerably, with individual species estimated to be observed between 1% (N. caledoniae) and 70% (Melanocanthus scutellaris) of the times when they were present. On the other hand, the variation in the species-specific probabilities of detection for predators was much less pronounced, with species estimated to be observed between 1% (D. prolixus) and 29% (Gminatus australis) of the times when they were present. Posterior estimates for the mean, standard deviation and CI95% for the species-specific probabilities of occurrence and detection for herbivores and predators are given in Table S2.
Trophic-level effects of covariates
The mean effect of vegetation volume on the probability of occurrence for herbivorous and predatory bugs was positive, with posterior CIs95% that either contained only positive values (herbivores) or with values that slightly overlapped zero (predators) (Table 2). In contrast, the mean effect of plant species diversity was negative for herbivorous bugs and positive for predatory bugs, with posterior CIs95% that distinctly overlapped zero (Table 2).
Predicted data derived from these effects showed that the predictive curves for the mean bug trophic-level response to the vegetation volume gradient had positive slopes for both herbivores and predators (Fig. 2a), whereas the bug trophic-level response to plant species diversity was negative for herbivores and positive for predators (Fig. 2b). When vegetation volume and plant species diversity were combined into a single environmental space, a trend of high occupancy of herbivores was predicted for increasing levels of vegetation volume coupled with decreasing levels of plant species diversity (Fig. 3a). On the other hand, high occupancy of predators was predicted for increasing levels of vegetation volume and plant species diversity (Fig. 3b). In our study, high occupancy levels of herbivores and predators (species occurring in more than 80% of sites) were almost exclusively associated with the environmental space bounding the golf courses’ data points (solid rectangle in Fig. 3a,b). However, high occupancy levels of predators were also associated to an extent with the environmental space bounding the gardens’ data points (dashed rectangle in Fig. 3b), which reflects the strong positive relationship between plant species diversity and occupancy by predators (Fig. 2b).
Species-specific effects of covariates
The mean species-specific effects of vegetation volume on the probabilities of occurrence for bugs were all positive, varying from 0.010 (S. pyrioides) to 1.682 (M. brevicornis) in herbivores, and from 0.137 (Oechalia schellenbergii) to 1.994 (D. prolixus) in predators. In contrast, the mean species-specific effects of plant species diversity were both positive and negative, varying from −2.112 (Dindymus versicolor) to 2.702 (S. pyrioides) in predators, and from −2.868 (Orius sp.) to 3.169 (Chinoneides tasmaniensis).
Mean and standard deviation posterior estimates for the covariates’ species-specific effects on the probabilities of occurrence for each herbivorous and predatory bug species are given in Tables S3–S4. We also provide in Tables S3–S4 the posterior estimates for a series of quantiles, from which it is possible to derive a range of credible intervals (99, 95, 75, 50, 25, 5 and 1%) to assess which species had the strongest responses to each of the explanatory variables. We associated species with the three highest CIs (99, 95 and 75%) that did not overlap zero as having a strong response to the given explanatory variable. As much as 59% (44 spp.) of herbivores showed strong positive responses to the vegetation volume gradient (Fig. 2c). The species with the strongest positive responses were M. brevicornis and Stenophyella macreta, both with CIs99% that contained only positive values. Likewise, as much as 44% (7 spp.) of predators showed strong positive responses to vegetation volume (Fig. 2e), all with CI75% that contained only positive values. Neither herbivores nor predators showed strong negative responses to vegetation volume.
Responses to the plant diversity gradient were more complex, with different species showing either a positive or a negative response. As few as 4% (3 spp.) of herbivores showed a strong positive response to plant species diversity (Fig. 2d). The species showing the strongest positive response was S. pyrioides, its CI99% containing only positive values. On the other hand, 9% (7 spp.) of herbivores showed a strong negative response to plant species diversity (Fig. 2d), all with CI75% that contained only negative values. Only two predators showed strong responses to the plant species diversity gradient (Fig. 2f). These species were C. tasmaniensis and Orius sp., which showed positive and negative responses, respectively. Both species showed CI75% that did not overlap zero.
Our study demonstrates that there are significant differences in the capacity of different green space types to support diverse herbivorous and predatory bug communities. Vegetation structure has a positive effect on bug diversity at the trophic- and species-specific levels (Fig. 2a); while plant species diversity has a more variable effect, generally increasing the diversity of predators, while reducing the diversity of herbivorous bugs (Fig. 2b). However, in both cases, these general responses to plant diversity are highly species specific, with individual species within each trophic group displaying quite different responses to plant diversity. These results indicate that the changes to urban vegetation associated with different green space management practises, will have a distinct effect on the predatory and herbivorous insects within these urban ecological networks.
In our examination of how bug species richness varied amongst green space types, we find strong evidence that golf courses are likely to sustain more herbivorous and predatory species than parks and gardens (Fig. 1). This finding is consistent with previous studies27. Given that in our study golf courses were the largest sites in surface area, this finding is also consistent with the species-area relationship. In our study, however, as much as 40% of golf course sites had more bug species than those predicted by the species-area relationship (Fig. S2). One potential explanation for golf courses presenting higher levels of herbivore and predatory bug species richness is that the diversity of vegetation on golf courses provides a wider range of resource-rich habitats relative to parks and gardens. For example, patches of low-intensity managed or unmanaged vegetation typical of tall grass or ‘rough’ areas of a golf course that contain ruderal grass and forb species may provide resources that support bug assemblages including granivores and grass specialists. Interestingly, analogous ruderal habitats in both agricultural (e.g. oldfields) and urban (e.g. brownfields, derelict sites, vacant lots) environments have been documented to be rich in rare and endangered insect biodiversity33,34. Additionally, in a parallel study the same golf course plots used in this study had higher native plant species richness than residential and park plots35, further supporting our findings that increases in the proportion of native plants may also benefit herbivore and predatory bugs in this system.
Our study strengthens this understanding about the role of golf courses in supporting urban biodiversity in two important ways. Firstly, our study demonstrates that vegetation structure and plant species diversity drive bug diversity, regardless of functional group (e.g. herbivores and predators). Secondly, by examining heteropteran bugs, our study extends our understanding of urban insects to those that show incomplete metamorphosis. Insects are divided into two clades, those that show incomplete metamorphosis, such as heteropteran bugs, and those that show complete metamorphosis, such as butterflies, bumble bees and ground beetles. Species that show incomplete metamorphosis are reliant on similar resources throughout their life, and thus better reflect local environmental conditions than species that vary their resource requirements according to life stage. Future research should focus on elucidating which vegetation features, or which plant species or group of species, contributes most to increases in the biodiversity of herbivorous and predatory insect species in different green space types.
When examined at the trophic-level both herbivorous and predatory bug assemblages show positive responses to vegetation volume (Fig. 2a). Both herbivorous and predatory bug assemblages require vegetation-derived resources to complete their life cycles. Herbivorous bugs, however, interact with vegetation resources directly, utilising their piercing-sucking mouth specialisations to feed on the most nutritional-rich portions of plants such as leaves, pollen, nectar, flower and leaf buds, and seed36. Most bug predators on the other hand interact with plant resources indirectly, utilising vegetation elements as hunting and mating grounds. Most interestingly, a few species, in the absence of suitable prey, will secure moisture and supplement their diets by feeding directly from plant resources36. These differences are likely to explain why the trophic-level response of herbivores was strictly positive, while the response of predators also included a negative component (Table 2). Vegetation volume also has a strong positive effect on the species-specific probabilities of occurrence of most herbivorous and predatory bug species, with many of the bugs in this study area predicted only to occur in sites with considerable vegetation volume (Fig. 2c,e). Our findings concur with non-urban studies that have investigated the positive relationship between vegetation structure and insect diversity20,22. However, our study shows that for both herbivorous and predatory insect species this relationship is species-specific, with most, but not all, species showing strong responses to an increase in vegetation volume. For example, most herbivorous and predatory bugs belonging in families traditionally associated with large-bodied species (e.g. Alydidae, Coreidae, Pentatomidae and Reduviidae) show strong positive responses to vegetation volume, indicating perhaps that some of these species have evolved in close association with large amounts of plant resources (e.g. the coreid Amorbus sp., a herbivore closely associated with native Eucalyptus trees37). On the other hand, herbivorous bugs belonging in families traditionally associated with small-bodied species with strong degrees of host specificity (e.g. Miridae and Tingidae)18 show high site occupancy regardless of the amount of vegetation volume, suggesting that for these species host-specificity is a more important driver of site occupancy than vegetation structure.
From a conservation standpoint, these findings are both concerning and exciting. They imply that most bug species will tend to decline in urban areas if the vegetation structure of green spaces is simplified, for example, if green spaces are managed predominantly as lawns or tree canopies. This simplification process could potentially lead to local extinctions, if it were to occur over large areas. Yet, our findings also imply that small-scale management actions that increase the structure of urban vegetation undertaken by both public (e.g. local governments) and private (e.g. homeowners) actors may encourage a greater diversity of heteropteran bugs. Local governments, for example, could boost insect diversity in their municipality by increasing the amount of mid-storey and grassland-type vegetation, and promote the retention or planting of native plant species.
Our data do not indicate an effect of plant species diversity on herbivorous or predatory bugs at the trophic-level. Rather, our results show that this effect is complex and distinctly species-specific, with species predicted to exhibit both positive and negative responses (Fig. 2d,f). Although bug herbivorous and predatory assemblages are structured by a mix of specialists and generalists, most bug species, particularly predators, tend towards a generalist diet, feeding on a wide array of host plants and arthropod prey15,36. Consequently, as our results have shown, we will expect that the overall effect of plant diversity on bug communities should be small and that the magnitude of this effect should be strong in only a small proportion of specialist species. For example, amongst the herbivorous species showing a mean positive response to plant species diversity, less than 5% showed a strong response, with the species showing the strongest response being the specialist non-native Azalea lacebug S. pyrioides. Azalea lacebugs, as their name implies, show strong host-specificity towards Rhododendron (Ericaceae), a genus that in our study occurred exclusively in association with garden sites characterised by high levels of exotic plant diversity35. Amongst the predators, only the stilt bug C. tasmaniensis showed a strong response to plant species diversity. Interestingly, this species is a specialist predator, feeding exclusively on insect specialist herbivores closely associated with a few native and non-native Geraniaceae. Positive relationships between plant and insect diversity have been recorded in mechanistic experiments by Haddad et al.19,20. However, our study suggests that in urban environments with much higher plant species richness and variability in plant species composition, the relationship between plant diversity and the response of insect species and trophic groups is much less consistent, and may be more strongly related with plant species identity than richness per se.
A potential explanation for this seemingly contradictory result is that in most urban environments, including our study area, high plant diversity is predominantly associated with residential gardens. Overall, residential gardens are thought to contribute substantially to insect diversity28, however, many management activities (e.g. pesticide use and high-intensity management) can greatly reduce their contribution38. In this study, for example, gardens supported significantly lower bug species richness than the other green space types (Fig. 1), perhaps due to their lower vegetation structural complexity. Alternatively, the high diversity of plant species in many residential gardens, resulting primarily from idiosyncratic human preferences39, mean that they may be dominated by non-native species35, which may not provide native insect specialists with the resources they need to thrive outside of their natural non-urban ranges. The question of why plant-diverse gardens in urban environments do not attain the high levels of herbivorous and predatory insect species predicted by the non-urban literature remains to be fully explored.
Our results suggest that high bug occupancy can be obtained in green spaces with specific combinations of vegetation structure and plant diversity. When the vegetation volume and plant species diversity gradients were combined into a single predicted environmental space, high occupancy of herbivores and predators was almost exclusively associated with the environmental space bounding the data points of golf courses (Fig. 3). We therefore conclude that large green spaces, such as golf courses, are more likely to support diverse herbivorous and predatory insect assemblages due to their ability to provide a greater heterogeneity of vegetation structure and plant diversity and favourable combinations of these green space attributes. The challenge we now face is understanding how we can boost the conservation value of all urban green spaces for herbivorous and predatory insects through management strategies and actions aimed at promoting synergistic combinations of vegetation structure and plant diversity. This will be especially important in large green spaces with simple vegetation structure, and in smaller green spaces such as public parks and residential gardens where it may be more difficult to intentionally achieve a heterogeneous mix of vegetation structure and diversity. Ultimately, tackling this conservation challenge could provide enormous benefits for all other elements of urban ecological networks, including human city-dwellers.
The study was conducted in Melbourne, Australia’s second most populated city (4 million inhabitants estimated for 2015) that supports diverse indigenous and introduced biodiversity. Melbourne spans several bioregions, so to standardise underlying geology, climate and remnant vegetation associations we limited the study area (Fig. 4a) to the south-eastern suburbs within the Gippsland Plain bioregion. The bioregion is characterised by sandy soils, average monthly maximum temperatures 13.5–25.9 °C, and average monthly rainfall 47.3–66.1 mm. The dominant native vegetation communities are grassy woodland and heathy woodland with a eucalypt overstorey40. The main types of urban green space include public parks, gardens, golf courses and scattered patches of remnant native vegetation41.
Within the study area, we mapped all golf courses and identified all residential neighbourhoods and public parks surrounding each golf course. We then identified triplets of green space sites (golf course, residential gardens, public park; Fig. 4b) established at approximately the same time (e.g. decade) as determined from historical aerial imagery and municipal land release records. In all, 39 sites (Fig. 4c) were randomly selected and stratified by the three green space types. In our study, these sites constituted the units of inference – that is, the spatial sample units in which we collected data to draw inferences on the ecological process (i.e. species site occupancy)42. Patches of remnant vegetation were not included in the study as they are unevenly-distributed and our study is focused on the effects of vegetation management in ‘human constructed’ green spaces. Triplets of sites were located on average 14 km from each other, and sites within each triplet were located at least two km from each other. This configuration was designed to generate a spatial distribution of sites that fulfills the requirement that observations should be drawn from spatially-independent units (i.e. each observation brings one full degree of freedom43). We therefore expected no positive effects of spatial-autocorrelation associated with our inferences. Site area ranged approximately across four orders of magnitude, varying from 6,712 to 862,022 m2 (mean = 273,193 m2).
Within each site we placed a series of sample plots (Fig. 4d), which in our study constituted the unit of detection replication – that is, the sample spatial units in which we collected data to draw inferences on the observation process (i.e. species detectability)42. We placed a minimum of two plots in sites < 50,000 m2 in size, with two additional plots being placed for every 50,000 m2 increase in site size. This configuration yielded a maximum of eight plots in golf courses (for details of plot placements see Threlfall et al.29). Taken together, we collected samples in 182 plots: 104 in golf course, 52 in residential gardens and 26 in public parks. Within each golf courses we placed half of the plots in ‘woodland rough’, characterised by low-intensity managed shrub and tree vegetation, and the other half in ‘long grassy rough’, characterised by low-intensity managed or unmanaged herbaceous vegetation without trees. Golf course and park plots had an area of 600 m2 (20 × 30 m), while garden plots ranged from 211 to 870 m2 (mean = 381 m2).
Insect sampling, sorting and identification
Insects were collected from 14 January to 12 March 2012 (Australian summer). At each plot, insects were collected from aboveground vegetation with 200 sweeps of an entomological net (50 cm diameter), transferred to 70% ethanol-filled containers for storage and preservation, and posteriorly sorted to order, and, whenever possible, bugs identified to species. Unlike many other insect taxa, bugs are taxonomically tractable, allowing specimens to be sorted to morphospecies and often to named species.
To measure vegetation structure within a plot, four parallel transects were established and sampled at 5 m intervals. At each interval, we recorded the identity and growth form of any plant species that intercepted a 2.5 m high pole at five height intervals (0.0–0.2 m; 0.2–0.5 m; 0.5–1.0 m; 1.0–2.0 m; >2.0 m). These data were used to calculate the volume of vegetation within a given height band. To account for the variable sizes of garden plots, we divided these volumes by the total available volume (i.e., area sampled multiplied by height of relevant sampling interval) to generate a variable of vegetation volume (vvol: percentage of volume occupied by vegetation). Additionally, the species identity data were used to generate a variable of plant diversity (psd: plant species diversity). Vegetation variables at the plot level were then used to calculate the average for a given green space site via averaging the values recorded for plots within each green space. In our study, vvol ranged from < 1% to 40% (mean = 20%), and psd from 12 to 70 plant species per plot (mean = 27).
Modelling framework: Multi-species site occupancy models
Multi-species site occupancy models or community occupancy models are grounded in the idea that communities and metacommunities can be described as a collection of individual species42,44. The hierarchical structure of multi-species site occupancy models is composed of three levels: a level for the ecological process (e.g. species site occupancy), another for the observation process (i.e. species detectability), and a third to account for the sampling of each species from its (meta)community. The model is therefore a (meta)community hypermodel, in which the occupancy, detection and effects parameters for each species are treated as random effects governed by hyperparameters that describe the (meta)community42.
A key advantage of multi-species site occupancy models is that they allow inferences at both the species level, such as the effects of covariates on the occupancy probability of each individual species, and community level, such as community responses to random effects (e.g. green space type or trophic-level). Another key value of this modelling framework is that the observation process hierarchical level reduces or even eliminates the bias generated by the imperfect detection of species45,46. Treating each species as random effects is yet another key feature of multi-species site occupancy models, particularly as this approach allows for the estimation of the species richness for the whole observed community, as well as the number of species occurring at each specified community level random effect (e.g. site, green space type, trophic-level)42,44. From the conservation point of view, multi-species site occupancy models are flexible analytical tools with the potential to improve assessments of biodiversity responses to management-oriented actions47.
We analysed our data using two variations of the multi-species site occupancy models provided by Zipkin et al.48 and Mata et al.33. In both models we confidently assumed that the species pool remained constant throughout the study, satisfying therefore an important assumption of the modelling framework.
Our models included an extra hierarchical level that specified that the species-level random effects were governed by urban green space type (UGS-model) or trophic-level (TL-model) hyperparameters. The occurrence model was specified as:
where Ψt,i,j is the probability that, within green space type (UGS-model) or trophic-level (TL-model) t, species i occurs at site j, and the detection model as:
where Φt,i,j,k is, within green space type (UGS-model) or trophic-level (TL-model) t, the detection probability of species i at site j at plot k. This specification satisfies the condition that the probability of detecting a species will be zero when it is not present.
In the UGS-model, the linear predictor of the occupancy model on the logit-probability scale was specified as:
while in the TL-model the occupancy model linear predictor was specified as:
where Ψt,i,j are the species-specific probabilities of occurrence for green space type (UGS-model) or trophic-level (TL-model) t; occt,i the species-level random effects for green space type (UGS-model) or trophic-level (TL-model) t; x1(t,i) and x2(t,i) the effects of covariates on the species-specific occurrence probabilities for trophic-level t; and vvolj and psdj the mean = 0, sd = 1 standardised values for the vegetation volume (vvol) and plant species diversity (psd) covariates for each site j. In the UGS-model, the species-level random effects occt,i were specified as:
where mut ~ log(omega) − log(1 − omega) and taut ~ Gamma (0.1, 0.1). Thus, the green space type occupancy hyperparameters were also considered random-effects governed by the global occupancy hyperparameter omega ~ Uniform (0, 1).
In the LP-model, the species-level random effects occt,i were specified as:
where mut ~ Normal (mu, sigma) and sigmat ~ Cauchy (0, 2.5). Thus, the trophic-level occupancy hyperparameters were also considered random-effects governed by the global occupancy hyperparameters mu ~ Cauchy (0, 2.5) and sigma ~ Cauchy (0, 2.5). This specification of normally-distributed hyperparameters with weakly informative Cauchy (0, 2.5) priors follows Gelman et al.49 and Stan Development Team50.
The effects of the covariates on species-specific occupancy x1(t,i) and x2(t,i) (TL-model) were specified as:
where mu.x1..2(t) ~ Normal (mu.x1..2, sigma.x1..2) and sigma.x1..2(t) ~ Cauchy (0, 2.5). Thus, the trophic-level effect hyperparameters were governed by the global effect hyperparameters mu.x1..2 ~ Cauchy (0, 2.5) and sigma.x1..2 ~ Cauchy (0, 2.5). Finally, we assumed in both the UGS- and TL-model that the detection probability of species i did not vary based on any measured covariate, and was thus determined by an unspecified species-level effect dett,i as:
In the UGS-model, we estimated the total species richness of each green space type t, as well as the species richness of herbivorous and predatory species, using the following summation structure:
where, within each green space t, St is the total number of sites, Nt the total number of detected species, and zi,j the latent occurrence matrix. As these calculations were done as derived quantities within our Bayesian modelling framework, we were able to report the species richness estimations with their full associated uncertainties.
Using the model’s trophic-level hyperparameters, we predicted trophic-level occupancy for herbivores and predators for 500 values within the range of the vegetation volume (vvol) and plant species diversity (psd) gradients. To guarantee predictions for a reasonable range of the gradients, we removed the 2.5% most extreme values from each end of the vvol and psd original ranges. We used these predictions to graphically represent (1) the individual effects of vvol and psd on the occupancy of herbivores and predators (Fig. 2), and (2) the combined effect of vvol and psd on the occupancy of herbivores and predators (Fig. 3). Into this latter predicted environmental space, we superimposed three rectangles, which represent the environmental space bounding the data points of the vvol and psd gradients as quantified in each green space type.
We modelled the effect of site area on bug species richness using the power function of the species-area relationship31:
where S equals the number or bug species within a site, A the site’s area, and c and z are function parameters. In the function’s linearised, logarithmically-transformed version, c equals the number of species in one unit of area and z the slope of the species-area line.
The model for the power function of the species-area relationship was specified as:
and the non-linear predictor as:
where, in each site i, Si and Ai are the number of observed bug species per site and the site’s area, respectively, and λi the intensity parameter, which in a Poisson distribution equals both the mean and variance42. The latent variables c and z were given non-informative Uniform (0, 1) priors.
We used the model’s parameters c and z to predict the number of bug species per site given the empirical site area data. Using a normally-distributed linear model (function lm in the R statistical environment51) we correlated these estimations with the observed species richness to obtain a coefficient of determination (r2). The value of r2 indicated the proportion of the variance in the estimated number of bug species that is predictable from our model – that is, the strength, or lack thereof, by which our data fits the power function of the species-area relationship.
Bayesian inference implementation
Model parameters were estimated under a Bayesian mode of inference. We used Markov Chain Monte Carlo (MCMC; Urban green spaces model and Species-area relationship model) and Hamiltonian Monte Carlo (HMC; Trophic levels model) simulations to draw samples from the parameters’ posterior distributions. MCMC algorithms were implemented in OpenBUGS52/JAGS53, accessed through the R packages R2OpenBUGS54/jagsUI55. Our MCMC implementation used three chains of 50,000 iterations, discarding the first 5,000 in each chain as burn-in. HMC algorithms were implemented in Stan56, accessed through the R package rstan57. Our HMC implementation used four chains of 5,000 iterations, discarding the first half iterations in each chain during warm-up. Visual inspections of MCMC and HMC chains plus values of the Gelman-Rubin statistic (R-hat < 1.1) indicated acceptable convergence48,58.
The codes and data to re-run the analyses and generate plots are provided in the Supplementary Information.
How to cite this article: Mata, L. et al. Conserving herbivorous and predatory insects in urban green spaces. Sci. Rep. 7, 40970; doi: 10.1038/srep40970 (2017).
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This study was funded by the Australian Research Council (LP110100686), the Australian Research Centre for Urban Ecology (ARCUE) and the Australian Golf Course Superintendents Association. Bob Carpenter provided assistance with the probabilistic programing language Stan, Briony Norton and Frances Alexander with fieldwork and insect sorting, and Melinda Moir with lacebug species identification. LM and CGT wish to acknowledge the support of funding from the Australian Government’s National Environmental Science Programme – Clean Air and Urban Landscapes (NESP-CAUL) hub. LM also wishes to acknowledge the support of funding from the Australian Research Council Centre of Excellence for Environmental Decisions (CEED). AKH was supported by the Baker Foundation.
The authors declare no competing financial interests.
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Mata, L., Threlfall, C., Williams, N. et al. Conserving herbivorous and predatory insects in urban green spaces. Sci Rep 7, 40970 (2017). https://doi.org/10.1038/srep40970
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