Mitochondrial and Chromosomal Damage Induced by Oxidative Stress in Zn2+ Ions, ZnO-Bulk and ZnO-NPs treated Allium cepa roots

Large-scale synthesis and release of nanomaterials in environment is a growing concern for human health and ecosystem. Therefore, we have investigated the cytotoxic and genotoxic potential of zinc oxide nanoparticles (ZnO-NPs), zinc oxide bulk (ZnO-Bulk), and zinc ions (Zn2+) in treated roots of Allium cepa, under hydroponic conditions. ZnO-NPs were characterized by UV-visible, XRD, FT-IR spectroscopy and TEM analyses. Bulbs of A. cepa exposed to ZnO-NPs (25.5 nm) for 12 h exhibited significant decrease (23 ± 8.7%) in % mitotic index and increase in chromosomal aberrations (18 ± 7.6%), in a dose-dependent manner. Transmission electron microcopy and FT-IR data suggested surface attachment, internalization and biomolecular intervention of ZnO-NPs in root cells, respectively. The levels of TBARS and antioxidant enzymes were found to be significantly greater in treated root cells vis-à-vis untreated control. Furthermore, dose-dependent increase in ROS production and alterations in ΔΨm were observed in treated roots. FT-IR analysis of root tissues demonstrated symmetric and asymmetric P=O stretching of >PO2− at 1240 cm−1 and stretching of C-O ribose at 1060 cm−1, suggestive of nuclear damage. Overall, the results elucidated A. cepa, as a good model for assessment of cytotoxicity and oxidative DNA damage with ZnO-NPs and Zn2+ in plants.


Results
Characterization of ZnO-NPs. Nanoparticles were characterized by UV-Visible, fluorescence, FT-IR spectroscopy, X-ray diffraction, TEM and SEM-EDX analyses ( Fig. 1 Panels A-F). Figure 1A shows the UV-visible spectrum of ZnO-NPs, which exhibits a sharp characteristic peak at ~370 nm at room temperature indicating the purity of ZnO-NPs ( Fig. 1A dashed line). Similarly, a sharp fluorescence emission peak (λ exc = 320 nm) of ZnO-NPs was obtained at 385 nm ( Fig. 1A solid line), which corresponds to the near band gap excitonic emission. No auxiliary band in visible region suggests the absence of oxygen vacancy in ZnO-NPs. FT-IR spectrum of ZnO-NPs shows a distinct absorption bands around wave number of 494 cm −1 (Fig. 1B). The results of XRD, TEM, SEM with EDX providing information regarding the shape, and size of ZnO-NPs are shown in Fig. 1C

Optical microscopic analysis of mitosis and chromosomal aberrations. Qualitative effect of
ZnO-NPs, ZnO-Bulk, and Zn 2+ ions on chromosomes at different phases of cell cycle viz. prophase, metaphase, anaphase, and telophase in untreated and treated root meristematic cells is shown in Fig. 2. Cells at each stage were scored for chromosomal aberrations (CA) such as irregular prophase, vacuolated nucleus at prophase, stickiness and disorientation at metaphase, polar deviation at anaphase, chromosome bridges with lag, multipolar anaphase and vagrant chromosomes. The cells exhibiting major chromosomal damage were quantified and genotoxicity represented in terms of mitotic index (MI) and % CAs, as a function of concentration of ZnO-NPs, ZnO-Bulk, and Zn 2+ ions (Table 1). Results in Table 1 and Supplementary Figure S2 revealed concentration dependent reduction in MI (%) and increase in frequency of CAs (%) of treated roots compared to untreated control, respectively. The data show that the MI (%) of onion roots treated with 50, 100, 200, 500, and 1000 μ g/ml was 53.06 ± 0.9, 46.46 ± 2, 42.6 ± 1.5, 37. 16 2+ ions, at similar concentration range under identical treatment conditions. The MI (%) for control was determined to be 58.4 ± 1.8, whereas no CAs was detected in untreated cells.

Confocal laser scanning microscopic (CLSM) analysis of root cells. Root tip cells of A. cepa grown
in absence and presence of ZnO-NPs were analyzed for chromosomal aberrations under CLS microscope after staining with acridine orange (10 μ g/ml). Different types of CAs such as metaphase stickiness, metaphasic disorientation, chromosome stickiness with lag, and polar disturbance at anaphase were detected (Fig. 2), which were similar to those detected in optical microscopic analysis and therefore substantiated the genotoxicity of ZnO-NPs in plant cells. Other studies have also demonstrated genotoxic effects of nanoparticles such as Al 2 O 3 -NPs 24 , and TiO 2 31 through confocal microscopy.

Scanning and transmission electron microscopy of treated roots. Morphological changes induced
by ZnO-NPs were visually observed under scanning electron microscope. The surface of untreated root was clear, smooth and intact and no charge on surface appeared during analysis (Fig. 3A,B). However, significant aberrations, nanometer scale charged particles, fissures and fractured tissues were observed on surface of roots treated with 1000 μ g/ml of ZnO-NPs. Root cells were found crumbled, surface ruptured and spikes of root tissues were present throughout the root surface. In addition, the charge imposed by the aggregation of ZnO-NPs was observed during the scanning process (Fig. 3C,D). The fissures and fractures across the root tissues and nanoparticles attached to the surface are shown in Fig. 3D inset. As compared to untreated control, TEM images of treated root cells showed a clear incursion and attachment of ZnO-NPs on the outer and inner surface of cell and nuclear membrane and intracellular cell junctions,

FT-IR analysis of root tips. Fine powder of dried roots of A. cepa grown in absence and presence of
ZnO-NPs, ZnO-bulk, and Zn 2+ ions at 1000 μ g/ml were analyzed to investigate the changes in characteristic signal of biochemical components (Fig. 6). The peaks in the spectra were assigned their corresponding characteristic to organic molecules. Broad peak at 3436-3346 cm −1 was assigned to N-H and O-H stretching of proteins and polysaccharides/water 37,38 . The peak at 2934 cm −1 was due to C-H asymmetric stretch of methylene group of lipids 39 , while peak at 1750 cm −1 was due to C= C vibrations of lipids and fatty acids 40 . Peaks located at 1643 and 1535 cm −1 were assigned to amide I of α -helix and amide II of β -sheet (C= N, C= C stretching) of secondary structure of proteins 37,39,40 . The peak positioned at 1405 cm −1 was assigned to C-O of COO − groups 31,34 . Peaks located at 1240 and 1060 cm −1 were due to asymmetric and symmetric P= O stretching of phosphodiesters and stretching of C-O of ribose sugars, respectively 40 .

Discussion
Recent upsurge in manufactured nanomaterials and their entry into the environment through accidental release during manufacture or via transport through atmospheric emissions, agricultural and domestic effluents, most  likely, alters the nature and magnitude of environmental exposure. The impact of such an exposure on terrestrial or aquatic plants has not been widely and systematically explored. Therefore, we have studied the effect of ZnO-NPs (25.5 nm) on A. cepa root tip cells at five different concentrations (50,100,200, 500, and 1000 μ g/ml) with the aim to investigate the phytotoxic and oxidative stress, based on end points, such as root growth inhibition, intracellular ROS generation, dissipation of mitochondrial membrane potential, lipid peroxidation, mitotic index and chromosomal aberrations viz. disturbed metaphase, sticky chromosome, and breaks. Our study distinctly demonstrated the dose dependent inhibition of A. cepa root length and root cell viability upon exposure to ZnO-NPs under in vitro conditions, which clearly suggests induced phytotoxicity and oxidative stress at cellular level. The results of root growth suppression assay corroborate earlier studies on the inhibition of root growth by ZnO-NPs in corn and cucumber plants 41 . Also, Kouhi et al. 20 demonstrated the phytotoxicity of ZnO-NPs, ZnO-microparticles, and Zn 2+ ions in terms of root length inhibition of Brassica napus seedlings, at the concentration range of 50-500 μ g/ml, in the following order as Zn 2+ > ZnO-MPs > ZnO-NPs, which supports our observations.  In A. cepa, we observed more pronounced inhibition with Zn 2+ ions vis-à-vis ZnO-NPs or bulk ZnO. The Zn 2+ ions have also been found to be more toxic in ryegrass species compared to ZnO-NPs 42 . It has been suggested that the toxicity of ZnO-NPs may not alone be attributed to their dissolution at the root surface, but also inside the tissue 43 . Depending on the plant species and the experimental milieu, the plausible factors that help promote ZnO-NPs entry into root cells and inhibit seedling growth may be ZnO uptake (external efficiency) or ZnO utilization (internal efficiency) in cells 43 . Since, the greater surface area-to mass ratio of the NPs compared to the bulk metals contributes higher reactivities 43,44 , the ZnO-NPs may form a complex with membrane transporters or root exudates before being transported into the plants. Once the NPs enter the plant cells, they may be transported either apoplastically or symplastically from one cell to another via plasmodesmata 42 . The SEM and TEM images of ZnO-NPs treated root cells in our study revealed clear incursion and attachment of ZnO-NPs on the outer and inner surface of cell and nuclear membrane and intracellular cell junctions. Interaction of ZnO-NPs with root surface induced significant morphological changes such as fissures, fractures and spikes and eventually caused damage to mitochondria and nucleus upon internalization. Most likely, the ZnO-NPs could find their way inside the cell, nucleus and mitochondria by the process of endocytosis 42 . The TEM micrographs of this study have revalidated the study of Lin and Xing (2008) regarding the free entry of ZnO-NPs in size range of 9-37 nm, average size 19 ± 7 nm on ryegrass and demonstrated their transportation through plasmodesmata 42 . The data revealed an influx of ZnO-NPs in cytoplasm and attachment to the tonoplast of vacuoles, infiltration to intracellular junctions with sequestration of ZnO-NPs on nuclear membrane, degeneration of nuclear constituents and significant swelling of mitochondria. Significant sequestration of ZnO-NPs in the cytoplasm was noted, probably due to the intracellular matrix (Fig. 4, Panel E, G, and H). It is also suggested that ZnO-NPs < 10 nm as demonstrated in Fig. 4 (panel H) can pass the cellular membranes easily and form agglomerates with other molecules within the cell.
ZnO-NPs treatment to roots has induced significant ROS generation and changes in Δ Ψm. Histochemical staining with DCFH-DA (25 μ M) and Rhodamine 123 (1 μ g/ml) using CLS microscope revealed concentration dependent ROS generation in meristematic zone of A. cepa roots. The data revealed an upward increase in the fluorescence of Rh123 from root tip to the root elongation zone as compared to untreated control, where no change in Δ Ψm of cells has occurred. Faisal et al. 35 have also reported a biphasic change in fluorescence intensity with a marked reduction in fluorescence of Rh123 in tomato root cells at lower NiO-NPs concentrations followed by fluorescence enhancement through diffusion of Rh123 fluorescence. The possible reason for fluorescence intensity reduction at lower concentrations could be due to dissipation of Δ Ψm by disruption of proton-moving force and/or the inner membrane permeability. Thus, the relation between greater ROS generation and decline in Δ Ψm supports the earlier findings of Liu et al. 45 with water soluble fullerenes. On the contrary, an increase in fluorescence at higher treatment doses relates with the inherent property of mitochondria to swell or shrink in response to changes in Δ Ψm. Thus, the intensity of Rh123 fluorescence changes with the morphological transitions 46 . Altered mitochondria can no longer retain Rh123, which leaks out from the mitochondrial membrane into the cytoplasm mainly due to swelling 43 . In A. cepa cells, mitochondrial swelling occurs at greater exposure doses of ZnO-NPs, ZnO-Bulk, and Zn 2+ ions, leading to leakage of Rh123 to cytosolic components of the treated cells and causing hyperpolarization of the dye. The ROS generation within mitochondria occurs in complex I and II of electron transport system through electron leakage, which can directly interact with mitochondrial proteins and lipids, and eventually cause dysfunction 36 . In plants, dissipation of Δ Ψm is reported to be an early marker or an essential event in plant apoptosis under stressed conditions 48 . ROS generation by ZnO-NPs, ZnO-Bulk particles may be principally related to their physical interaction with roots and/or dissolution of Zn 2+ ions 20 . In our study, dose dependent alteration of mitochondrial membrane potential (ΔΨm) was also observed. Since, mitochondria balance the cellular redox potential, interactions between the NPs and mitochondrial membrane, may cause the uncoupling of the respiration, thereby, increasing oxidative stress in the cell 49,50 . Mitochondria are well known organelles responsible for ROS generation in cell 51 . Therefore, it is envisaged that interactions of ZnO-NPs, ZnO-Bulk, and Zn 2+ with electron transport system of mitochondria may lead to the alterations in ΔΨm, which ultimately cause a consequent increase in the ROS level of cell in a dose related fashion. The ROS inducing potential was found to be in the order as Zn 2+ ions > ZnO-NPs > ZnO-bulk. Indeed, the toxic effect of ZnO-NPs, ZnO-Bulk and Zn 2+ may also be due to the production of ROS and its interaction with the fatty acids present in lipid membranes, which may cause the formation of lipid peroxides thereby destabilizing the membranes 17 .
Besides, the intracellular ROS mediated conversion of fatty acids, present in biological lipid membranes, to lipid peroxides generates thiobarbituric acid reactive species (TBARS). Our results exhibited the formation of TBARS with ROS at all concentrations of ZnO-NPs and correlates well with alterations in ΔΨm. Significant change in Δ Ψm was noted in ZnO-NPs treated roots as compared to ZnO-bulk. Increased levels of TBARS upon treatment of roots with ZnO-NPs, ZnO-Bulk, and Zn 2+ ions suggested significant lipid peroxidation. Our results support the observations of Kumari et al. 27 , who have also reported higher levels of TBARS in case of ZnO-NPs treatment vis-à-vis bulk particles. Some earlier studies have also reported the oxidative stress generation and changes in ΔΨm in germinating seedlings of Vigna radiata by Ag-NPs 52 and Lycopersicon esculentum by NiO-NPs 35 . Hernandez et al. 53 detected the oxidative stress generation in Brassica oleracea roots under short and long term salt stress by measuring the fluorescence of DCF. Tan et al. 54 have also reported the generation of oxidative stress by MWCNTs in rice seedlings. To combat with the ROS generated under stressed conditions, plants possess antioxidative enzyme defense system, which includes the enzymes such as catalase (CAT), guaiacol peroxidase (GPX) and superoxide dismutase (SOD). The data revealed a gradual increase in % CAT and GPX activity in root cells treated with ZnO-NPs, ZnO-bulk, and Zn 2+ ions in concentration range of 50-1000 μ g/ml. Hernandes-Viezcas et al. 55 support our findings of increase in CAT activity in a dose related manner, in their study on Prosopisjuliflora velutina plant treated with ZnO-NPs.
FT-IR spectrum of untreated roots exhibited a variety of sharp peaks, indicative of the pattern of major groups of biochemical constituents of onion root tissue, which corresponds with the FT-IR spectrum reported by Siva et al. 56 . A minor shift in the position of peaks located at 1643 and 1535 cm −1 and an increase in the % transmittance of treated groups clearly indicates the disturbance in α -helices and β -sheets of secondary structure of root proteins. Similarly, a decrease in the absorbance and shift of the peaks positioned at 1240 and 1060 cm −1 supports the damage of phosphate backbone and C-O bond between ribose/deoxyribose sugars of nucleic acids (DNA and RNA) as compared to untreated control. Peak shifting and decrease in the absorbance, in such a way suggests the concentration dependent damage of polysaccharides (3346 cm −1 ) and lipids (1750 cm −1 ) by ZnO-NPs, ZnO-bulk and Zn 2+ ions. The FT-IR results indicate that ZnO-NPs can adhere to the surface of root cells, subsequently enter into cells and interact with biological macromolecules including DNA, RNA, proteins, lipids and other cellular biomolecules. The quantitative and detailed chemical state information regarding the surface of ZnO-NPs can be further obtained using synchrotron/X-ray photoelectron spectroscopy (XPS) analysis. Quantification of intracellular zinc in digested untreated and treated root tissues by atomic absorption analysis revealed an average of 1.5% internalization of zinc in root cells exposed to 100 μ g/ml of ZnO-NPs, compared to 0.041% in untreated control group (results not shown), which explicitly demonstrated the adsorption and internalization of zinc in A. cepa root cells, as also validated by SEM and TEM analyses.
Indeed, the standard phytotoxicity tests such as germination and root elongation used in most of the phytotoxicity studies may not be sufficient and sensitive enough for evaluation NPs toxicity in terrestrial plants. Therefore, the cytotoxic and genotoxic potential of NPs was further assessed by studying chromosome alterations. The results demonstrated significant aberrations in chromosomes like disturbed metaphase, sticky chromosome, cell wall disintegration, breaks and decrease in mitotic index, in A. cepa root tip cells treated with 50, 100, 200, 500 and 1000 μ g/ml of ZnO-NPs. No chromosomal aberrations were observed in the control (untreated onion root tips) and the mitotic index (MI) value was determined to be 60.3%. However, with increasing concentration of the NPs, a substantial decrease in the mitotic index (60.30% to 27.62%) was observed, which corroborate the earlier studies 57,58 . The reduction in MI (%) and increase in chromosomal anomalies (%) might be due to the interference of ZnO-NPs and Zn 2+ ions in suspension with normal DNA replication process and thereby blocking the DNA synthesis at G1 stage. They may also cause chromosomal adherence which ultimately trigger cell death 59 . Significant number of chromosomal breaks, bridges, and stickiness in roots treated with ZnO-NPs, ZnO-Bulk and Zn 2+ may be either due to the inversion of chromosomal segments or due to the breakage and fusion of chromosomes. Moreover, chromosomal adherence could be due to inaccurate packing of chromosomal fibers within chromosomes that can lead to the inter-connections between chromoproteins that help the chromosomes to connect through sub-chromatidic bridges 60 . Multipolar anaphase has been reported as a consequence of ZnO-NPs or Zn 2+ interaction with mitotic spindle, which leads to the improper distribution of chromosomes 61 . It has been reported that chromosomal disorientation at metaphase may occur under the stress of ZnO-NPs and Zn 2+ ions, which might be due to the loss of ability of chromosomes to align at equatorial plate which suggests interaction of ZnO-NPs with the microtubules of spindle fibers 61 . Similar aberrations (chromosomal breaks, stickiness, diagonal anaphase, multipolar anaphase, C-mitosis, and micronucleus) have been reported under the exposure of other NPs (Al 2 O 3 , MWCNT, TiO 2 ) 24,30,31 .
The schematic representation of plausible mechanism of ZnO-NPs behavior in cellular environment is depicted in Fig. 7. It can be speculated that ZnO-NPs when come in close proximity to A. cepa roots get deposited by process of adsorption on its surface because the surface forces of root, as adsorbent, are unsaturated. It occurs when both repulsive and attractive forces become balanced. The uptake of NPs across the cell wall largely depends on the size of the particles and fairly constant size of pores across the cell wall 19 . The Fig. 7 reveals the infiltration of ZnO-NPs inside the cell and their attachment to the tonoplast of vacuoles, translocation to intracellular junctions with sequestration of ZnO-NPs on nuclear membrane, degeneration of nuclear constituents and appearance of swollen mitochondria. ZnO-NPs mediated increase in the level of TBARS as a result of membrane lipid peroxidation and generation of intracellular ROS are responsible for the change in mitochondrial Δ Ψ m coupled with mitochondrial swelling. Even at low concentrations, ZnO-NPs effectively collapse the mitochondrial membrane potential and thus account for the damaging effects of mitochondrial energetics 62 . Swelling of mitochondria with decreased matrix electron density is evident from the study performed with the isolated mitochondria and corroborates our findings 69 . Scheme in Fig. 7 also illustrates the adherence of ZnO-NPs on chromosomes involved in the normal process of mitosis and anomalies caused by them which halt the normal cell division and thus arrest the cell cycle.

Conclusion
The results ascertained A. cepa plants as a bio-indicator for efficient evaluation of cytogenetic effects of metal oxide NPs, specifically ZnO-NPs and Zn 2+ ions. The experimental data revealed that ZnO-NPs can penetrate into plant tissues and generate intracellular ROS, which eventually induces oxidative imbalance leading to mito-depressive and genotoxic effects, following the scheme depicted in Fig. 7. Since, plants are important component of the ecosystem; they cannot be ignored while evaluating the overall toxicological impact of the NPs in the environment. It is envisaged that quantitative assessment of the adverse effects of NPs in both agricultural and of environmental systems is important. Further investigations are warranted to address the issues involving the NPs uptake kinetics, interaction mechanism within cells, and threshold amount that plants can uphold without any signs of phyto-stress.

Methods
Characterization of nanoparticles. ZnO Treatment to A. cepa roots. Healthy onion bulbs were selected and placed after removing their outer scales onto glass beakers (Borosil, India) filled with 10 ml ddw. Prior to use the glass beakers were rinsed with 1 N HCl. It was also ensured that the ring of root primoridia left undamaged prior to growing in dark 63 . The test was performed at a relatively constant temperature 20 ± 2 °C. Bulbs were provided fresh ddw supply after every 24 h until the roots attain the length of 2-3 cm. Roots were then exposed to treatments with the ZnO-NPs, ZnO-Bulk and Zn 2+ ions solutions (50,100,200, 500, and 1000 μ g/ml) under identical conditions for 12 h. Germinated seedlings were protected from direct light to avoid any disturbances in physiology of roots, thereby, minimizing the interruption of cell cycle.

Measurement of growth.
Growth of the bulbs exposed to ZnO-NPs, ZnO-Bulk, and Zn 2+ ions solutions was measured in terms of their root length. For this, at the end of treatment, experiment was terminated and five roots for each treatment were cut from disc of root primoridia and length was measured individually 63 . Index of tolerance was calculated using following formula:  35% water and stored at 4 °C until use. Ten root tips per bulb were excised and processed using the method described by Rajeshwari et al. 24 . Three best preparations were visualized and scored for mitosis analysis by use of Olympus trinocular microscope (BX60), Japan equipped with ExwaveHAD color video camera (Sony, Japan). 1000 cells were counted per slide. Percent mitotic index was calculated for each treatment using following formula: % Mitotic Index (MI) = TDC/TC × 100, where, TDC is Total number of dividing cells and TC is total number of cells counted.

Confocal Laser Scanning Microscopic (CLSM) analysis of root cells. Untreated and treated A. cepa
root tips were taken and incubated with 1 N HCl at 80 °C for 15 min for optimum hydrolysis of cell wall followed by three subsequent washings with ddw. Root tips were then stained with nucleic acid specific stain acridine orange (AO) at 10 μ g/ml in phosphate buffer, and incubated for 10 min. Throughout the incubation, dark condition was maintained. Root tip slides were prepared following the method described above. The chromosomal aberrations were then visualized using Leica TCS SPE, confocal laser scanning microscope (Leica Microsystems, Germany).

Scanning Electron Microscopy (SEM) of treated roots. Apical parts of the roots grown in absence and
presence of ZnO-NPs were fixed in 2.5% glutaraldehyde and 2% paraformaldehyde in 0.1 M sodium phosphate buffer (pH 7.2) for 12 h at 4 °C with intermittent stirring. Samples were dehydrated through a graded series of ethanol (10%, 20%, 30%, 50% and 70% once for10 min at each step). Roots were then transferred to critical point dryer using CO 2 as transitional fluid, which removes water from the specimen and avoids unwanted damage due to the surface tension generated by a liquid/gas interface. Dehydrated roots were then put on the two sided carbon tape fix on SEM stub and visualized under JSM 6510LV scanning electron microscope (JEOL, Tokyo, Japan) at an accelerating voltage of 10 kV.
Transmission Electron Microscopy (TEM) of treated roots. Small root tips (2 × 2 × 2 mm in size) from untreated and treated with ZnO-NPs were fixed in primary fixative mentioned above and processed following the method of Ali et al. 64 .

Detection of root cell viability (TTC assay). Metabolically active and inactive root cells under the expo-
sure of test species were detected using the method of Shaymurat et al. 65 . The test was performed in dark due the instability of TTC to light. After the incubation, roots were rinsed with ddw and cell viability was observed.

Effect of ZnO-NPs on ROS production and mitochondrial membrane potential (ΔΨm).
A qualitative in vivo method was used to assess the ROS inducing potential of ZnO-NPs and their impact on Δ Ψm. For determination of ROS generation, roots from untreated and treated sets were stained with 0.25 μ M of 2′ , 7′ -dichlorofluorescein diacetate (DCFH-DA) for 15 min at 25 °C 27 . Changes in Δ Ψm were observed by staining the roots from untreated and treated sets with Rhodamine123 (Rh123) for 20 min 35 . Dark conditions were maintained throughout the process. Stained roots were washed with 0.1 M phosphate buffer to remove the excess stain and then mounted on glass slides. Slides were visualized using Leica TCS SPE, confocal laser scanning microscope (Leica Microsystems, Germany). Images were taken using attached camera component Leica DFC 365 FX Digital Camera. Oxidative stress generated by ROS was also quantified. Briefly, apical part of 10 roots (~5mm) grown in the absence and presence of ZnO-NPs, ZnO-Bulk, and Zn 2+ in the concentration range of 50-1000 μ g/ml were homogenized in 5 ml (0.1 M) phosphate buffer (pH 7.2). Homogenates were centrifuged at 8000 rpm for 15 min. Supernatants were added with DCFH-DA (25 μ M) and incubated for 30 min in dark. After incubation, fluorescence intensity of dichlorofluoresecein (DCF) was recorded at the excitation/emission wavelength of 460/530 nm by using spectrofluorophotometer (RF-5301PC), Shimadzu Scientific Instruments, Kyoto, Japan equipped with Xenon lamp (150 W) and RF 530XPC.
Determination of lipid peroxidation. Determination of lipid peroxidation in treated and untreated roots was performed by measuring malondialdehyde (MDA) following the method of Ohkawa et al. 66 . Absorbance was recorded at 450, 532, and 600 nm. MDA level was calculated using the following formula: C (μ mol/L) = 6.45 × (Abs 532 − Abs 600 ) − 0.56 × Abs 450.

Determination of antioxidant enzymes.
To evaluate the antioxidant enzyme activities in onion root tissues, the root tips (200 mg) exposed to ZnO-NPs, ZnO-Bulk and Zn 2+ ionic solutions were crushed with chilled 50 mM phosphate buffer (pH 7.4), using mortar and pestle, followed by the centrifugation at 10,000 rpm for 30 min. Final volume of supernatant was stored at 4 °C until use. Superoxide dismutase (SOD) level was determined using the method of Rajeshwari et al. 24 . Guaiacol peroxidase (GPX), and catalase (CAT) activities were assayed following the methods described by Zhang et al. 67 with some modifications. Activity of SOD, GPX and CAT was expressed in terms of percent increase.
FT-IR analysis of root tips. Root tips (n = 20) each from plants treated with 100 μ g/ml of ZnO-NPs, ZnO-Bulk and Zn 2+ solution and untreated controls were dried in a hot-air sterilizer, York scientific industries Pvt. Ltd. at 50 °C for 48 h. Dried roots were powdered using mortar and pestle and sieved through a mesh. KBr discs were made with IR grade KBr in a mortar in the ratio of 1:100 (sample: KBr). FT-IR analysis was performed in attenuated total reflectance (ATR) mode in the range of 4000-400 cm −1 using Spectrum Two FT-IR spectrometer (Perkin Elmer, UK). Statistical analysis. Data represent the mean ± S.D. of two independent experiments in triplicate. Statistical analysis was performed using one-way analysis of variance (ANOVA) and Tukey's test, using Minitab 17.