Table 1: Comparison of plastid genomic characteristics in seven Ilex species and Helwingia himalaica.

From: Chloroplast genome structure in Ilex (Aquifoliaceae)

 Ilex latifoliaIlex szechwanensisIlex pubescensIlex polyneuraIlexnew sp.Ilex delavayiIlex wilsoniiHelwingia himalaica
Total paired-end reads1,057,8441,292,5861,135,472467,1161,338,8641,201,9781,459,906914,296
Aligned paired-end reads1,045,0691,257,3991,131,722465,0401,327,0851,198,5371,448,390907,908
Mean coverage143.8523.2504523.21006.0562.3342.6188.2
Number of contigs2308468474476106142
Mean length (bp)1,6492,4192,8343,5053,6542,5641,9821,820
N50 (bp)2,8068,7629,0899,5039,5068,3438,3464,534
Sum contigs length (bp)379,388203,271192,740164,767160,803194,865210,138258,537
Size (bp)157,610157,900157,741157,621157,611157,671157,918158,362
LSC length (bp)86,95287,20487,10987,06486,94887,00087,26687,810
SSC length (bp)18,42918,51318,43618,43518,43418,43618,43218,560
IRs length (bp)52,22952,18352,19652,12252,22952,23552,22051,992
Protein Genes [unique]96[74]96[74]96[74]96[74]96[74]96[74]96[74]94[76]
tRNA [unique]40[26]40[26]40[26]40[26]40[26]40[26]40[26]40[26]
rRNA [unique]8[0]8[0]8[0]8[0]8[0]8[0]8[0]8[0]
GC content (%)37.6037.7037.6037.6037.6037.6037.6037.70