Table 3: A description of the top three k-mers found by AdaBoost and their corresponding regions in A. baumannii AB_2008-15-34-7, S. aureus 08-01059, S. pneumoniae ATCC 700669, and SMRU2064.

From: Antimicrobial Resistance Prediction in PATRIC and RAST

Rankα-valuek-mers with an identical patternCorresponding genesPATRIC annotation
A. baumannii, carbapenem
 11.211fig|1221255.3.peg.3516LysR-family transcriptional regulator clustered with PA0057*
 20.824fig|1221255.3.peg.3314NAD+–asparagine ADP-ribosyltransferase
 30.773fig|1221255.3.peg.631Dihydrodipicolinate synthase family
S. aureus, methicillin
 12.373321fig|1413344.3.peg.2510,fig|1413344.3.peg.2511,fig|1413344.3.peg.2512Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46); MaoC domain protein; Penicillin-binding protein PBP2a, Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase
 21.1626fig|1413344.3.peg.1752hypothetical protein
 30.8417fig|1413344.3.peg.1698Phage protein
S. pneumoniae, beta-lactam
 10.7417fig|561276.4.peg.338Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)
 20.6216intergenic regionbetween Multiple sugar ABC transporter proteins (fig|561276.4.peg.108 and fig|561276.4.peg.109)
 30.6014fig|561276.4.peg.338Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)
S. pneumoniae, co-trimoxazole
 10.665intergenic regionimmediately downstream of Dihydropteroate synthase (EC 2.5.1.15) (fig|1313.2194.peg.17)
 20.552fig|1313.2194.peg.1876Dihydrofolate reductase (EC 1.5.1.3)
 30.516fig|1313.2194.peg.1874Glucan-binding domain / Lyzozyme M1 (1,4-beta-N-acetylmuramidase) (EC 3.2.1.17)
  1. Genomes were chosen as examples with exact k-mer matches. The complete list of k-mers is described in the supplementary data file.
  2. *Occurs next to fig|1221255.3.peg.3517, Metallo-beta-lactamase superfamily protein PA0057.