Figure 4 | Scientific Reports

Figure 4

From: CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data

Figure 4

Venn diagrams of Differentially Expressed Genes (DEGs) identified using DESeq from three different alignment results:GSNAP with SNP tolerance and 2 mismatches (CADBURE selected alignment), GSNAP without SNP tolerance, with 2 mismatches and TopHat2 with 2 mismatches.

(a) DEGs upregulated in Epithelial cells. (b) DEGs upregulated in Fiber cells. Significant DEGs are identified with p-adj value <= 0.05.

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