Table 2: Description of 15 CNVs detected and their association with traits.

From: Copy number variation-based genome wide association study reveals additional variants contributing to meat quality in Swine

No.Chromosome NameStart PositionEnd PositionLength (bp)Frequency of CNVP value after FDR correctionvalidation
b24*MarblingpH6IMFNGSQPCRPublished paper
CNV11242457549242519391618430.870.96080.05860.14010.0435YesNoYes
CNV2394706101948686611625610.830.71240.58480.22570.3560YesNo
CNV3496277909963819471040390.260.65980.70110.15320.9950YesYesYes
CNV44133873894133948941750480.400.97700.62580.49870.7785YesYesYes
CNV55213398912243599810961080.141.00000.35870.11690.5496YesYesYes
CNV656093629561005896696020.260.46480.17230.84300.4360YesYesNo
CNV7579366287798077844414980.720.14360.07560.21090.2191YesYesYes
CNV87121924542122002552780110.850.00930.33510.13810.5722YesNoYes
CNV91093697529462206924550.470.00690.02830.00160.0272YesYesYes
CNV10104917352849255139816120.570.05220.07500.00100.0481YesYesYes
CNV111211462476117204682579930.580.00800.08770.13250.1275YesNoYes
CNV121256893678570204681267910.790.05980.00550.00120.0030YesYesYes
CNV13174183930941873384340760.530.00740.06250.09890.0717YesYesNo
CNV141823383197236232582400620.430.99360.45330.14700.7194YesYesYes
CNV151846776812469830722062610.350.60180.16090.01100.1617YesYesYes
  1. 1. p values < 0.05 after FDR correction were shown in bold and italic.
  2. 2. pH6, b24*, and IMF were stand for pH value at 6 h postmortem, color b* at 24 h postmortem, and intramuscular fat.