Table 2 The occurrences and ranks of top pathways across eight methods associated with differences in breast cancer subtypes

From: GSAASeqSP: A Toolset for Gene Set Association Analysis of RNA-Seq Data

Index Pathway NOC Rank 1 Rank 2 Rank 3 Rank 4 Rank 5 Rank 6 Rank 7 Rank 8 Avg
G1 REACTOME DNA STRAND ELONGATION 7 0 5 4 2 4 1 1 2 2.71
G2 REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX 8 2 9 2 4 6 3 3 19 6.00
G3 PID FOXM1PATHWAY 8 1 2 3 10 20 5 4 5 6.25
G4 PID AURORA B PATHWAY 8 3 4 11 1 13 4 5 25 8.25
G5 REACTOME G1 S SPECIFIC TRANSCRIPTION 8 9 7 1 18 12 2 2 16 8.38
G6 REACTOME G1 PHASE 8 11 6 8 15 21 8 7 4 10.00
G7 PID ATR PATHWAY 7 0 19 14 3 5 9 11 13 10.57
G8 KEGG DNA REPLICATION 8 8 16 10 5 8 11 10 18 10.75
G9 REACTOME G2 M CHECKPOINTS 8 18 8 5 25 1 13 9 7 10.75
G10 REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION 7 10 1 12 16 0 6 6 29 11.43