Table 1 The occurrences and ranks of the top pathways across eight methods associated with differences between kidney and liver tissue

From: GSAASeqSP: A Toolset for Gene Set Association Analysis of RNA-Seq Data

Index Pathway NOC Rank 1 Rank 2 Rank 3 Rank 4 Rank 5 Rank 6 Rank 7 Rank 8 Avg
G1 BIOCARTA AMI PATHWAY 8 1 2 7 1 15 1 1 2 3.75
G2 REACTOME XENOBIOTICS 8 3 1 6 3 23 2 2 1 5.13
G3 REACTOME COMPLEMENT CASCADE 6 0 4 9 0 6 4 9 4 6.00
G4 BIOCARTA INTRINSIC PATHWAY 8 2 3 8 2 26 3 3 3 6.25
G5 BIOCARTA COMP PATHWAY 5 0 10 1 0 0 8 6 8 6.60
G6 KEGG PRIMARY BILE ACID BIOSYNTHESIS 6 4 6 12 0 0 10 8 7 7.83
G7 KEGG RETINOL METABOLISM 6 11 8 13 0 0 6 4 6 8.00
G8 KEGG COMPLEMENT AND COAGULATION CASCADES 6 12 11 10 0 0 9 7 5 9.00
G9 REACTOME BILE ACID AND BILE SALT METABOLISM 6 0 9 11 0 10 5 10 9 9.00
G10 REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS 7 9 5 14 0 18 7 5 15 10.43
  1. NOC: number of occurrences; 1: Weighted_KS; 2: L2Norm; 3: Mean; 4: WeigtedSigRatio; 5: SigRatio; 6: GeometricMean; 7: FisherMethod; 8: RankSum; Avg: the average rank.