Table 3 Genotype and minor allele frequencies of 30 SNPs in 7 genes in 925 controls

From: Screening of Clock Gene Polymorphisms Demonstrates Association of a PER3 Polymorphism with Morningness–Eveningness Preference and Circadian Rhythm Sleep Disorder

Gene SNP Allele (A/a) Variation (amino acid) AA Aa aa MAF P (HWE) Genotyping Assay ID
CLOCK rs34897046 C/G S/C 1 0 0 0 1 C__25595098_10
  rs6855837 C/A L/I 1 0 0 0 1 C__29101689_10
  rs3762836 A/G H/R 0.981 0.019 0 0.01 1 C__27479322_10
  rs1801260 T/C   0.707 0.268 0.025 0.159 1 C___8746719_20
CRY2 rs2863712 T/G W/G 1 0 0 0 1 C__16079564_10
NPAS2 rs34628006 A/G T/A 1 0 0 0 1 C__25757964_10
  rs2305160 G/A A/T 0.659 0.297 0.043 0.192 0.243 C__15976652_10
  rs11541353 C/T S/L 1 0 0 0 1 C___2153849_10
  rs58728948 G/A A/T 1 0 0 0 1 C__25757546_10
PER1 rs2585405 C/G P/A 0.345 0.477 0.178 0.417 0.592 C__16260899_10
  rs3027193 G/A R/H 1 0 0 0 1 C__15770159_10
PER2 rs2304672 C/G   0.893 0.106 0.001 0.054 0.472 C___2129919_1_
  rs35572922 G/T A/S 1 0 0 0 1 C__25973284_20
  rs4429421 G/A V/I 0.991 0.009 0 0.004 1 C__27970170_10
  rs35333999 G/A V/I 1 0 0 0 1 C__25992030_10
  rs35998480 T/A F/Y 1 0 0 0 1 C__25958587_10
  rs934945 G/A G/E 0.476 0.428 0.096 0.31 1 C___8740718_20
PER3 rs10462020 T/G V/G 0.928 0.07 0.002 0.037 0.731 C__25956444_10
  rs35687686 C/T R/W 1 0 0 0 1 C__25970031_10
  rs228696 C/T L/P 1 0 0 0 1 C_____10225_10
  rs35899625 T/G L/W 1 0 0 0 1 C__25967284_10
  rs228697 C/G P/A 0.846 0.149 0.004 0.079 0.606 C_____10224_10
  rs2640909 T/C M/T 0.782 0.204 0.014 0.116 0.96  
  rs2640905 C/G S/C 1 0 0 0 1 C__16268919_10
  rs35802556 C/T T/I 1 0 0 0 1  
  rs10462021 A/G H/R 0.928 0.07 0.002 0.037 0.731  
  rs35072750 A/G T/A 1 0 0 0 1 C__25963142_20
TIM rs774027 T/A L/I 0.359 0.453 0.188 0.415 0.048 C___8340562_10
  rs774047 A/G Q/R 0.354 0.456 0.19 0.418 0.064 C___3134218_10
  rs2291739 C/T P/L 0.316 0.474 0.211 0.448 0.215 C__15966257_10
  1. A, major allele; a, minor allele; MAF, minor allele frequency; HWE, Hardy-Weinberg equilibrium; P, P value for HWE.