Table 3: Heterozygosity and effective population size (Ne) estimates based on whole genome sequence data

From: Genome-wide genotype and sequence-based reconstruction of the 140,000 year history of modern human ancestry

SampleHeterozygosity for Polymorphic SitesHeterozygosity for All SitesNe based on θWaNe based on θHeta
ASW0.1500.00095230,85921,649
CEU0.1900.00071717,08416,312
CHB0.1900.00067215,57715,280
CHS0.1900.00067115,46215,254
CLM0.1670.00076922,44317,486
FIN0.1950.00071916,40416,364
GBR0.1880.00072117,17916,394
IBS0.2640.00070619,12516,052
JPT0.1980.00067315,28915,311
LWK0.1420.00096630,09021,982
MXL0.1720.00073620,45116,750
PUR0.1670.00078423,27817,830
TSI0.1790.00072317,79516,446
YRI0.1540.00095427,83421,708
  1. aθW refers to Watterson's estimator of the population-scaled mutation rate θ, which is frequency-independent. θHet refers to the estimator based on heterozygosity, which is frequency-dependent.