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Metabolic engineering of the iodine content in Arabidopsis

Abstract

Plants are a poor source of iodine, an essential micronutrient for human health. Several attempts of iodine biofortification of crops have been carried out, but the scarce knowledge on the physiology of iodine in plants makes results often contradictory and not generalizable. In this work, we used a molecular approach to investigate how the ability of a plant to accumulate iodine can be influenced by different mechanisms. In particular, we demonstrated that the iodine content in Arabidopsis thaliana can be increased either by facilitating its uptake with the overexpression of the human sodium-iodide symporter (NIS) or through the reduction of its volatilization by knocking-out HOL-1, a halide methyltransferase. Our experiments show that the iodine content in plants results from a balance between intake and retention. A correct manipulation of this mechanism could improve iodine biofortification of crops and prevent the release of the ozone layer-threatening methyl iodide into the atmosphere.

Introduction

Iodine is an essential micronutrient for human health, as it is required for the synthesis of the thyroid hormones: thyroxine and tri-iodothyronine1. The sodium-iodide symporter (NIS) drives uptake of iodide across the basolateral membrane of the thyrocytes. NIS is also present in other tissues where iodine is concentrated, such as gastric mucosa, salivary glands and lactating mammary glands1. Iodine deficiency affects about two billion people worldwide and results in a series of disorders including goitre and mental retardation2. Iodization of salt is the most common method for dietary iodine supplementation3. However, iodine salts may be volatile and losses may occur during transport, storage and cooking2.

Biofortification of crops with iodine would represent a cost-effective way to prevent its deficiency, since iodine in foodstuffs is readily bioavailable and assimilated4,5. Plants can accumulate this element, but fruits and vegetables are in general poor sources of it. Increasing iodine applications to the soil can result in an enhanced iodine accumulation in crops4,6. However, results are often inconsistent and dependent on the plant species, the iodine source and the methods of feeding, indicating that a better understanding of the factors affecting the ability of a plant to accumulate iodine would be necessary to set up reliable biofortification programs.

The physiology of iodine in plant is poorly characterized. Plants can absorb iodine from the soil and it is assumed that in root cells iodine fluxes across membranes through putative H+/halide transporters and anion channels7. However, the molecular identities of such transporters have not yet been established7,8. Once inside the plant, a xylematic flux of iodine seems to be predominant4,6,9,10, although a phloematic route for this element has been recently observed in tomato11. Methyl iodide emission from the plant aboveground organs has been recently described in different species12,13,14,15. Responsible for this iodine volatilization are specific enzymes possessing a S-adenosyl-L-methionine –dependent methyltransferase activity13,14,15. Particular attention has to be paid to this phenomenon since it contributes to the general mechanism of methyl halide emissions from natural sources, threatening the stratospheric ozone layer13,14.

Metabolic engineering has been successful in fortifying crops with several nutrients16, including folate17 and iron18 but, to date, no reports of enhancement of iodine content of plants using a molecular approach have been published. In this work, we describe how two different and opposite mechanisms, intake and release, can modulate the dynamics of iodine in the model plant Arabidopsis thaliana.

Results

Since plant root transporters for iodine have not yet been isolated, we attempted to increase the iodine uptake of Arabidopsis thaliana plants by expressing the human sodium-iodide symporter (hNIS) protein under the control of the CaMV 35S promoter. Several independent transgenic lines were obtained with different levels of expression of the hNIS gene (Fig 1a). Line 16 was used for the experiments described in this paper, which were confirmed also by using line 17 (not shown). In NIS plants, hNIS expression was higher in roots than in leaves (Fig 1a). Radioactive 125I (approximately 0.3 pmol) were fed to wild type (WT) and NIS transgenic plants, which were kept at different temperatures. NIS plants accumulated more radioactive iodine and this was particularly evident when plants were fed iodine at 30°C (Fig. 1b), a temperature that does not enhance the expression of hNIS (Fig. 1d) but is closer to the physiological environment of the human thyroid. At 37°C the plants suffered from heat stress, as demonstrated by the induction of HSP25.3 and this reduced the expression of hNIS (Fig. 1d). Iodine accumulated at a higher level in the young parts of the plant (Fig. 1c). Nitrate is an essential nutrient for plants, but can negatively affect the activity of NIS19. Increasing the nitrate level had a positive impact on the 125I uptake in WT plants, but decreased the iodine content in NIS plants (Fig. 1e), in line with its negative effect on the NIS transporter19. Because of the short duration of the treatment with high temperature or low nitrate, which were both limited to the iodine administration (approx. a week), no negative effects on plant growth were observed (data not shown). No differences related to the genotype were observed in the content of total nitrogen of the plants (Fig. 1g), indicating that the activity of NIS did not interfere with nitrogen metabolism. A positive effect of iodine feeding on nitrogen content was observed (Fig. 1g) and, although not relevant in the context of iodine biofortification, would be worthy of further study.

Figure 1
figure 1

Expression of human NIS in Arabidopsis plants.

(a) Selection of transgenic Arabidopsis lines expressing different levels of NIS. Expression of NIS was measured by qRT-PCR (n = 3, ± s.d., expression in NIS10 = 1); expression in leaves and roots from line 16 is also shown. (b) Uptake of 125I by wild-type (WT) and NIS plants (NIS) at different temperatures (n = 3, ± s.d.). (c) Organ-distribution of 125I in WT and over-expressors of NIS kept at 30°C. A color scale, indicating the different levels of radioactivity, is shown. (d) Effect of temperature on the expression of hNIS in NIS plants (Line 16). The expression of HSP25.3 is also shown as a control for the heat response of plants. Expression of hNIS and HSP25.3 was measured by qRT-PCR (n = 3, ± s.d.). Expression at 23°C in one of the replicates was taken as a reference and its value set at 1. (e) Effect of different nitrate concentrations on 125I uptake in WT and NIS plants (n = 3, ± s.d.). (f) Iodine content after feeding 35 μmol non-radioactive iodide in WT and over-expressors of NIS. In this experiment, plants were grown in soil and KI was used as a source of iodine. Comparable results were obtained by either growing plants in a hydroponic system (data not shown) or giving NaI as a source of iodine. (g) Iodine, sodium and total nitrogen content in WT and NIS plants grown in a hydroponic system without (white bars) or with 30 μM NaI (black bars) for four weeks (n = 3).

These results suggested that the presence of NIS enabled Arabidopsis plants to accumulate more iodine. However, when we tried to feed plants with non-radioactive iodide, applied at a quantity more appropriate for a biofortification approach (35 μmol), we were puzzled by the comparable final iodine contents in WT and NIS plants (Fig. 1f). Remarkably, while iodine content in NIS plants did not differ from that of the wild-type, the content of sodium increased in NIS plants, indicating that the NIS protein was active in the transgenic plants (Fig. 1g). The NIS protein act as a symporter of sodium and iodide and the increased sodium content observed in the NIS plants would have predicted an increased iodine content too, which was instead not observed (Fig. 1 f, g). As the difference in the two types of experiments (radioactive vs. non-radioactive iodide) depends on the iodine concentration used, we hypothesized that, in addition to iodine uptake, iodine retention could also play an important role, affecting the final iodine level measured in plants. High levels of iodine can be toxic to plants20 and they may possess a homeostatic mechanism to get rid of excessive iodine.

An important player in iodine removal from plant tissues in Arabidopsis could be HOL-1, a methyltransferase that catalyzes the S-adenosyl-L-methionine-dependent methylation of halides, including iodide, to produce volatile methyl iodide13. We therefore analyzed a hol-1 mutant line known to be unable to produce methyl iodide13 and found it displayed a significantly higher 125I content than WT, when plants were fed 0.3 pmol radioactive 125I (Fig. 2a). Again, most of the 125I accumulated in the apex and young leaves (Fig. 2b). Not only the quantity, but also the distribution of iodine was wider than WT in hol-1 plants, as indicated by the translocation of 125I up to the inflorescence tip (Fig. 2c). When 35 μmol non-radioactive iodide was fed, hol-1 plants accumulated much higher levels of iodine compared to WT (Fig. 2d), without any negative impact on biomass at the iodine amount fed to the plants (not shown). Additional experiments on the impact of iodine on plant growth parameters showed that only after repeated feeding with iodine a reduction in growth can be observed, which was however largely independent of the genotype (Fig. S1). The levels of iodine in hol-1 plants decreased four days after feeding, demonstrating that, besides HOL-1, there must be a second metabolism for removing the excess iodine from the plant, possibly involving other HOL methyltransferases13,14.

Figure 2
figure 2

Impact of HOL-1 on iodine dynamics in plants.

(a) 125I uptake in Arabidopsis wild type (WT) plants and in mutants lacking HOL-1 activity (hol-1) (n = 3, ± s.d.). Distribution of 125I radioactivity in WT and hol-1 plants at the rosette stage (b) and at the flowering stage (c). Iodine treatments were carried out at 23°C as described in Figure 1. Color scale is shown in Figure 1c. (d) Iodine content in WT and in hol-1 plants after feeding 35 μmol non-radioactive iodide. (e) Induction of HOL-1 expression by iodide. 14d-old seedlings grown in liquid culture were fed iodide at the concentrations shown. The expression of HOL-1 was measured at time 0 and 20 min. after the treatment by qRT-PCR (n = 3, ± s.d., value at time 0 = 1). (f) HOL-1 gene expression in WT and over-expressors of NIS (NIS) fed with 25 mM non-radioactive iodide. Expression was measured by qRT-PCR (n = 3, ± s.d., value in WT at time 0 = 1).

HOL-1 is expressed constitutively at relatively high levels in Arabidopsis plants (Fig. S2). Interestingly, HOL-1 expression resulted to be further induced by iodide (Fig. 2e) and in NIS plants fed with iodine a higher and prolonged induction of this gene was observed over the time, particularly in the older leaves (Fig. 2f).

We finally crossed NIS plants with the hol-1 mutant and found that 125I feeding resulted in iodine content in NISxhol-1 > hol-1 > NIS > WT (Fig. 3a). Translocation of 125I along the inflorescence was very efficient in NIS, hol-1 and NISxhol-1 plants (Fig. 3b). Following iodide administration at micromolar levels, iodine content was effectively enhanced in NISxhol-1 plants compared to both the parental lines, although with a mild difference with respect to hol-1 plants.

Figure 3
figure 3

Enhanced iodine uptake in Arabidopsis plants overexpressing the human NIS in the hol-1 background.

(a) 125I uptake in Arabidopsis plants lacking HOL-1 (hol-1) and over-expressing hNIS (NISxhol-1), in comparison to wild type (WT), NIS and hol-1 plants (n = 3, ± s.d.). (b) Organ-distribution of 125I in WT, NIS, hol-1 and NISxhol-1 flowering plants. Iodine treatments were carried out at a T° = 30°C. Color scale is shown in Figure 1c. (c) Iodine content (n = 3, ± s.d.) in WT, NIS, hol-1 and NISxhol-1 plants after feeding 3.5 and 35 μmol non-radioactive iodide (T° = 30°C). In this set of experiments, two different wild type genotypes (Col-0 and gl1) were tested, representing the genetic backgrounds of hol-1 and NIS plants, respectively.

Discussion

The negative impact of iodine deficiency on human health has prompted several actions, with iodization of salt being the most widely used approach3. While seaweeds represent a good source of iodine, fruits and vegetables contain very low iodine amounts and several attempts are being carried out to set-up protocols for crop iodine biofortification4,5. Regretfully, the knowledge on the physiology of iodine in plants is almost non-existing. Iodine does not play any role in the physiology of plants, although this element can be taken-up by plants from the soil. The most obvious biotechnological approach to increase iodine content in plants would be to enhance its uptake. In this work we demonstrated that indeed a higher iodine uptake can be achieved, by the overexpression of the human NIS. Interestingly, we found that, unless HOL-1 was knocked-out, the increased iodine uptake driven by NIS was not accompanied by iodine accumulation in the plant. In NIS plant, the higher uptake rate of iodine further increased the already high HOL-1 expression (Fig. S2; Fig. 2f) vanishing the effect of NIS in terms of net iodine accumulation. Sodium, which is co-transported with iodine by NIS, is instead retained in the plant (Fig. 1g). The relevance of iodine volatilization as methyl iodide in plants exogenously fed with iodine suggests that iodine biofortification programmes of crops such as rice would result in the release of massive amounts of methyl iodide, a threat for the ozone layer13,14. Rice is indeed the best candidate for iodine biofortification programmes, as this cereal represents the staple food for millions of people in areas where iodine deficiency is a plague. Nowadays, five percent of methyl iodide arise from rice fields worldwide12 and these values would dramatically increase should rice iodine biofortification programs be put in place without a careful genetic evaluation of rice genotypes for low HOL activity.

In a perspective of crop biofortification with iodine, the removal of the volatilization process rather than the increase of the iodine uptake would more markedly affect the final iodine content in plants. Intelligent breeding for crops with low HOL activity would not only be important in iodine biofortification efforts but would also reduce the release of the ozone layer-threatening methyl halides into the atmosphere13,14.

Methods

Plant material and growth conditions

Arabidopsis thaliana, Columbia-0 (Col-0) and glabra1 (gl1) backgrounds were used in the experiments. After germination, plants were transplanted into soil or transferred into a hydroponic system, according to the kind of experiment. Plants grown in soil (Hawita Flor, Germany) were watered twice a week. The hydroponic system was based on thick gravel (3–5 mm in diameter) and a nutrient solution, whose composition was as follows (concentrations expressed in mM): Ca(NO3)2 3.5, KNO3 1.5, KH2PO4 0.5, MgSO4 0.75, (concentrations expressed in μM): Fe-Na-EDTA 72, H3BO3 52, MnCl2 10, ZnSO4 2, CuCl2 1.6, (NH4)6MO7O24 0.08. Fresh solution was added weekly. All plants were grown in plastic pots (diameter 5 cm) in a growth chamber, with 80 µmol m−2 s−1 PAR (GroLux, OH, USA), 12 h light photoperiod, 23°C temperature, 55% relative humidity.

The analysis of iodine toxicity was performed using plants grown in pots. When plants were 2 weeks old, they were fed NaI twice a week for four weeks with a NaI solution (5 ml/pot at the concentrations shown in figure).

For the analysis of NIS gene expression, NIS seedlings were grown for two weeks in vertical plates containing 0.5X MS medium, 1% sucrose and 0.9% agar in a growth chamber (same conditions as described above). After two weeks, some of the plates were transferred for 2 h at 30°C or 37°C. Plantlets were collected from all the treated plates as well as from control untreated plates (remained at 23°C).

Col-0 hol-1 mutant line (T-DNA.SALK_005204)21, with a T-DNA insertion in At2g43910, was obtained from the European Arabidopsis Stock Centre (NASC, University of Nottingham, UK). Homozygous plants were identified via PCR screening of genomic DNA using gene-specific primers (listed in Supplementary Table 1) together with T-DNA left border-specific primers.

NISxhol-1 plants were obtained by crossing NIS plants from two independent lines (line 16 and 17) with hol-1 mutants and then screening the resulting F2 generations by PCR.

For the non-radioactive iodide uptake and the induction of the HOL-1 gene, 4-week-old plants grown in soil, were treated with various quantities of potassium iodide (KI) (as specified in the figure legends). KI at different concentrations was distributed in the soil as a single treatment dissolved in 35 ml deionized water, to give the final quantities indicated in the text and in the figure legends. The experiments were carried out for eight days, with samples taken at different time-points. Three replicates were analyzed for each treatment and/or time-point. Experiments of non-radioactive iodide uptake were also repeated with NaI and with plants grown both in soil and in a hydroponic system.

For liquid cultures, sterilized seeds were plated in multiwell plates containing 0.5X MS medium, 0.5% sucrose and 0.5X PPM in a final volume of 2 ml. Seeds were grown under continuous light and shaken at a temperature of 23°C for two weeks. Treatment with iodide was carried out by placing the seedlings in a fresh MS liquid medium supplied with 5 and 25 mM KI. Samples were taken after 0 and 20 min. Three biological replicates were analyzed.

Preparation of constructs and transgenic plants

The whole coding sequence of human NIS (hNIS) with KpnI and BamHI restriction sites at 5′ and 3′ end, respectively, was obtained by PCR from the plasmid pcDNA3-Hnis22. The amplified hNIS was inserted into a genetic cassette downstream of a Cauliflower mosaic virus 35S promoter and upstream of a Nopaline synthase (NOS) terminator using its KpnI and BamHI ends. For the plant transformation, a pBIN-hNIS binary vector was used. pBIN-hNIS is a pBIN19-derived plasmid carrying the 35S promoter::hNIS::NOS terminator genetic cassette inserted between the EcoRI and ClaI restriction sites. The plasmid was introduced into the Agrobacterium tumefaciens GV3101 strain, using the freeze-thaw method.

gl1 background of Arabidopsis was used for plant transformation. Transgenic plants were obtained using the floral dip method23. T0 seeds were screened for kanamycin resistance (pBIN-hNIS contains the NptII gene coding for neomycin phosphotransferase II under the control of the pNOS promoter, thus conferring kanamycin resistance to plants). Homozygous lines were identified in T2 populations by analyzing segregation ratios. T3 or subsequent generations of line 16 and 17 (not shown), were used in the other experiments. Lines 16 and 17 carried independent insertions, as resulted by TAIL-PCR amplification24 of T-DNA flanking sequences (Figs. S3 and S4). Primers used for TAIL-PCR analysis are listed in Supplementary Table 1.

Quantitative RT-PCR analyses

Total RNA was extracted from the plant material (seedlings or rosette leaves, as indicated in the figure legends) using the RNeasy kit (Qiagen, CA, USA) in accordance with the manufacturer's instructions. Following a DNase treatment using the TURBO DNA-free kit (Ambion, TX, USA), 5 µg of RNA were reverse transcribed into cDNA using the Superscript III reverse transcriptase kit (Invitrogen). Quantitative RT-PCR amplifications were carried out with the ABI Prism 7300 Sequence Detection System (Applied Biosystems, Life Technologies, CA, USA), using a TaqMan Universal PCR Master Mix (Applied Biosystems) for the amplification of hNIS and a Power SybrGreen Master Mix (Applied Biosystems) for the amplification of HOL-1, HSP25.3 (At4g27670) and UBQ10 (At4g05320). UBQ10 was used as a reference gene. Primers are listed in Supplementary Table 1. The relative quantification of gene expression was performed using the comparative threshold cycle method, as described in the ABI PRISM 7700 Sequence Detection System User Bulletin Number 2 (Applied Biosystems).

Radioactive iodine uptake experiments

Arabidopsis plants, grown in hydroponics, were treated with radioactive iodine (125I as NaI) starting at the age of four weeks (rosette stage) or six weeks (flowering stage) after germination. Each iodine treatment consisted in giving 1 ml of a 0.25 µCi ml−1 Na125I solution (approximately 0.1 pmol Na125I), directly added to the hydroponic medium. A total of three iodine feeding treatments were performed in each experiment, at two-day intervals, for a total amount of 0.3 pmol iodide supplied per plant. Plants during the iodine treatment (approx. a week) were grown at a temperature of 23°C or 30°C as indicated in the figure legends. The two different temperatures did not result in any differential effect on the plant growth, due to the short period of time. Each experiment was replicated three times.

Nitrate experiment

Arabidopsis plants grown in hydroponics were divided into two groups, starting from the beginning of the iodine treatment. One set of plants was maintained in the usual complete hydroponic solution (containing 5 mM nitrate), while another identical set was moved to a modified nutrient solution in which the nitrate content was diluted to a final concentration of 0.5 mM nitrate. As described above, three iodine feeding treatments (1 ml for each treatment of a 0.25 µCi ml−1 Na125I solution, approx. 0.1 pmol) were carried out, at two-day intervals, for a total amount of iodine supplied per plant equal to 0.3 pmol. The two different nitrate levels did not produce any differential effect on the plant growth, due to the short period of time. Each experiment was replicated three times.

Visualization of radioactive iodine uptake

At the end of each uptake experiment plants were cut at the hypocotyl level, gently washed, blotted onto filter paper and then exposed for two days to a Multipurpose Phosphor Storage Screen (Packard, CT, USA) in order to obtain a digital image of the radioactivity distribution. Digital images were obtained and analyzed using a Cyclone Storage Phosphor System (Packard). Data as DLUs (Digital Light Units) were expressed as relative radioactivity levels (100 = wild type) and the scanned images are shown using false colors, where red and blue indicate a high or low level of radioactivity, respectively.

Iodine, sodium and nitrogen measurements

The iodine content of Arabidopsis plants (rosette leaves) was measured using the Inductively Coupled Plasma - Mass Spectrometry (ICP-MS) technique25. Iodine was determined using an isotope dilution with iodine-127. The iodine concentration in the samples was evaluated using a calibration curve obtained with the standard additions method. The sodium content was measured by the Inductively Coupled Plasma by Optical Emission Spectrometry (ICP-OES) technique26. Total nitrogen was measured using the Kjeldahl method27 and expressed as grams per 100 g of fresh weight. Three replicates were analyzed for each treatment. Analyses were carried out by Neotron Spa (Italy).

Analysis of HOL-1 expression in publicly available microarray datasets

The average mRNA abundance of HOL-1 (At2g43910) was measured in various tissues and at different developmental stages using Affymetrix ATH1:22K publicly available microarray datasets. Data were retrieved from the Genevestigator28 webtool on January 18th, 2012.

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M.L., experimental design, analysis of transgenic lines, expression analysis, uptake experiments; S.G., experimental design, molecular cloning, Arabidopsis transformation; C.K., analysis of transgenic lines, uptake experiments; P.A. and A.D., NIS cloning; A.A., P.V and A.P., general discussion, laboratory coordination; M.T. and P.P., experimental design, initiation and coordination of the research project. P.P. and S.G. wrote the manuscript.

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Landini, M., Gonzali, S., Kiferle, C. et al. Metabolic engineering of the iodine content in Arabidopsis. Sci Rep 2, 338 (2012). https://doi.org/10.1038/srep00338

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