Table 3: Taxonomic and functional classification of communities from metagenomic libraries of 34 soil samples from non-rehabilitated, rehabilitating and reference sites from two iron-ore mines, Corumbá, Mato Grosso do Sul, Brazil.

From: A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining

Sample Alias Sample ID Number of contigs Number of CDS Classified CDS Unclassified CDS Number of Genera Number of different functions
NR_M5_1 MG171 135,797 123,230 113,675 9,555 1,664 6,769
NR_M5_2 MG172 110,156 88,340 78,069 10,271 1,652 6,057
NR_M5_3 MG173 127,830 84,564 76,370 8,194 1,583 6,027
NR_PR_1 MG152 48,854 34,574 28,374 6,200 1,467 4,498
NR_PR_2 MG153 71,968 53,781 44,922 8,859 1,586 51,59
NR_PR_3 MG147 15,018 10,461 9,283 1,178 853 2,741
NR_RN_1 MG141 192,916 163,614 145,797 17,817 1,808 7,540
NR_RN_2 MG142 70,101 54,039 48,130 5,909 1,544 5,262
NR_RN_3 MG143 204,263 175,879 157,329 18,550 1,824 7,324
REF_A_1 MG163 256,960 197,062 159,536 37,526 1,894 8,643
REF_A_3 MG165 63,656 39,039 30,236 8,803 1,428 5,195
REF_B_1 MG156 48,507 33,925 28,716 5,209 1,403 4,425
REF_B_3 MG158 142,828 191,768 84,886 16,882 1,737 5,794
REF_C_1 MG174 65,769 43,759 36,997 6,762 1,372 4,497
REF_C_2 MG175 44,973 31,717 27,736 3,981 1,261 4,149
REF_C_3 MG166 87,360 54,934 45,323 9,611 1,523 4,750
RH_M5_1 MG170 60,777 44,591 38,495 6,096 1,500 4,759
RH_M5_2 MG161 43,609 32,799 28,893 3,906 1,346 4,639
RH_M5_3 MG162 50,393 35,744 30,963 4,781 1,373 4,661
RH_MC_1 MG167 15,205 9,708 8,308 1,400 942 2,886
RH_MC_3 MG169 38,569 26,907 22,408 4,499 1,334 4,565
RH_ME_1 MG137 54,573 36,071 31,285 4,786 1,239 4,212
RH_ME_2 MG138 23,548 161,377 14,221 1,916 913 3,222
RH_ME_3 MG139 102,373 60,377 49,696 10,681 1,590 5,003
RH_PA_1 MG159 117,602 81,492 70,877 10,615 1,643 5,653
RH_PA_3 MG151 52,570 38,612 33,140 5,472 1,460 4,656
RH_PB_2 MG155 62,923 45,304 37,582 7,722 1,431 4,219
RH_PB_3 MG146 28,526 19,291 16,603 2,688 1,188 3,873
RH_PI_1 MG144 50,794 37,158 33,510 3,648 1,246 5,184
RH_PI_2 MG145 45,768 30,553 25,689 4,364 1,222 4,189
RH_PI_3 MG136 9,777 6,045 4,920 1,125 739 2,233
RH_SC_1 MG148 49,559 31,403 28,178 3,225 1,276 4,489
RH_SC_2 MG149 19,921 14,859 13,023 1,836 1,049 3,387
RH_SC_3 MG150 95,547 73,395 62,663 19,732 1,638 5,503
  1. CDS are protein-coding sequences. The number of genera corresponds the number of distinct, fully identified genera of archaea, bacteria, and viruses.