Table 5: Metrics after integration of the paired-end assemblies generated during the process of producing the draft cork oak genome.

From: The draft genome sequence of cork oak

Size range (bp) Number of contigs Total length (bp) Percentage of assembly
≥ 1,000 168,041 939,042,321 100
≥ 2,000 126,359 877,345,132 93.4
≥ 3,000 97,522 806,202,144 85.9
≥ 4,000 77,322 736,006,133 78.4
≥ 5,000 62,344 668,885,815 71.2
≥ 6,000 50,853 605,984,813 64.5
≥ 7,000 41,920 548,098,241 58.4
≥ 8,000 34,715 494,194,371 52.6
≥ 10,000 24,215 400,472,101 42.6
≥ 12,500 15,612 304,434,896 32.4
≥ 25,000 2,384 84,635,745 9.0
≥ 50,000 238 16,928,971 1.8
≥ 75,000 74 7,341,458 0.8
≥ 100,000 30 3,667,156 0.4
  1. The integration of the two paired-end assemblies was performed using GARM20. The number of contigs for different size ranges, as well as the total length and the percentage of the assembly for each size range, are indicated.