Table 3: Previously sequenced Prochlorococcus genomes included in the cyanobacterial clusters of orthologous groups of proteins (CyCOG) definitions.

From: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

Name Genome source Clade Assembly size (bp) %GC No. coding sequences* NCBI accession Sequence reference
MED4 Cultured isolate HLI 1,657,990 30.8 1,959 BX548174 10
MIT9515 Cultured isolate HLI 1,704,176 30.8 1,951 CP000552 4
AS9601 Cultured isolate HLII 1,669,886 31.3 1,944 CP000551 4
MIT9202 Cultured isolate HLII 1,691,453 31.1 2,000 DS999537 49
MIT9215 Cultured isolate HLII 1,738,790 31.1 2,035 CP000825 4
MIT9301 Cultured isolate HLII 1,641,879 31.3 1,925 CP000576 4
MIT9312 Cultured isolate HLII 1,709,204 31.2 1,982 CP000111 16
UH18301 Cultured isolate HLII 1,654,648 31.2 1,947 PRJNA47033 50
W6 Single cell amplified genome HLII 385,307 31.3 646 ALPK00000000 12
HNLC2 Metagenomic assembly HLIII 1,484,494 30.3 1,701 GL947595 14
W3 Single cell amplified genome HLIII 339,045 30.7 529 ALPC00000000 12
W5 Single cell amplified genome HLIII 99,467 29.8 212 ALPL00000000 12
W7 Single cell amplified genome HLIII 905,221 30.7 989 ALPE00000000 12
W8 Single cell amplified genome HLIII 841,756 31.4 917 ALPF00000000 12
W9 Single cell amplified genome HLIII 420,150 30.7 638 ALPG00000000 12
HNLC1 Metagenomic assembly HLIV 1,569,623 29.8 1,830 GL947594 14
W10 Single cell amplified genome HLIV 561,998 30.8 892 ALPH00000000 12
W11 Single cell amplified genome HLIV 766,829 30.6 929 ALPI00000000 12
W12 Single cell amplified genome HLIV 423,437 29.6 602 ALPJ00000000 12
W2 Single cell amplified genome HLIV 1,266,767 30.5 1,374 ALPB00000000 12
W4 Single cell amplified genome HLIV 765,485 29.9 819 ALPD00000000 12
NATL1A Cultured isolate LLI 1,864,731 35.0 2,242 CP000553 4
NATL2A Cultured isolate LLI 1,842,899 35.1 2,194 CP000095 4
MIT9211 Cultured isolate LLII,III 1,688,963 38.0 1,943 CP000878 4
SS120 Cultured isolate LLII,III 1,751,080 36.4 1,973 AE017126 17
MIT9303 Cultured isolate LLIV 2,682,675 50.0 3,253 CP000554 4
MIT9313 Cultured isolate LLIV 2,410,873 50.7 2,993 BX548175 10
  1. *For the cultured isolate and metagenomic assembly genomes, this value represents the number of coding sequences as predicted in this study using the RAST pipeline; these values may differ from those previously published for this reason. Re-annotation data is included in this dataset (Data Citation 1: Prochlorococcus Portal http://proportal.mit.edu/ and Data Citation 2: Dryad http://dx.doi.org/10.5061/dryad.k282c).