Abstract
The nitrogen deletion of secondary amines has emerged as an effective strategy for direct molecular skeletal editing and carbon–carbon bond formation. However, current methods are often limited to acyclic bis(α-primary) amines and cyclic amines, which possess two stabilizing elements at the α-position of amine. Here we report the use of O-diphenylphosphinylhydroxylamine as a reagent for nitrogen deletion of secondary amines to form C(sp3)–C(sp3) bonds. This method overcomes substrate requirements of other methods and tolerates a range of secondary amine substrates. The process can be readily applied to multiple nitrogen deletion processes, is tolerant of both air and water, forms water-soluble byproducts and can be readily scaled to a hundred-gram scale. The versatility of the method is further showcased through the direct editing of natural products, pharmaceutical compounds, N-coordinated ligands, a three-dimensional amine cage and the synthesis of several bioactive compounds.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 digital issues and online access to articles
$119.00 per year
only $9.92 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
Data availability
The data that support the findings of this study are available within the paper and its supplementary information files.
References
Blakemore, D. C. et al. Organic synthesis provides opportunities to transform drug discovery. Nat. Chem. 10, 383–394 (2018).
Campos, K. R. et al. The importance of synthetic chemistry in the pharmaceutical industry. Science 363, eaat0805 (2019).
Jurczyk, J. et al. Single-atom logic for heterocycle editing. Nat. Synth. 1, 352–364 (2022).
Peplow, M. An explosion of methods to insert, delete or swap single atoms in the cores of molecules could accelerate drug discovery. Nature 618, 21–24 (2023).
Cao, Z.-C. & Shi, Z.-J. Deoxygenation of ethers to form carbon–carbon bonds via nickel catalysis. J. Am. Chem. Soc. 139, 6546–6549 (2017).
Dherange, B. D., Kelly, P. Q., Liles, J. P., Sigman, M. S. & Levin, M. D. Carbon atom insertion into pyrroles and indoles promoted by chlorodiazirines. J. Am. Chem. Soc. 143, 11337–11344 (2021).
Ma, D., Martin, B. S., Gallagher, K. S., Saito, T. & Dai, M. One-carbon insertion and polarity inversion enabled a pyrrole strategy to the total syntheses of pyridine-containing lycopodium alkaloids: complanadine A and lycodine. J. Am. Chem. Soc. 143, 16383–16387 (2021).
Lyu, H., Kevlishvili, I., Yu, X., Liu, P. & Dong, G. Boron insertion into alkyl ether bonds via zinc/nickel tandem catalysis. Science 372, 175–182 (2021).
Woo, J. et al. Scaffold hopping by net photochemical carbon deletion of azaarenes. Science 376, 527–532 (2022).
Reisenbauer, J. C., Green, O., Franchino, A., Finkelstein, P. & Morandi, B. Late-stage diversification of indole skeletons through nitrogen atom insertion. Science 377, 1104–1109 (2022).
Bartholomew, G. L., Carpaneto, F. & Sarpong, R. Skeletal editing of pyrimidines to pyrazoles by formal carbon deletion. J. Am. Chem. Soc. 144, 22309–22315 (2022).
Li, H. et al. Rhodium-catalyzed intramolecular nitrogen atom insertion into arene rings. J. Am. Chem. Soc. 145, 17570–17575 (2023).
Pearson, T. J. et al. Aromatic nitrogen scanning by ipso-selective nitrene internalization. Science 381, 1474–1479 (2023).
Qin, H., Guo, T., Lin, K., Li, G. & Lu, H. Synthesis of dienes from pyrrolidines using skeletal modification. Nat. Commun. 14, 7307 (2023).
Woo, J., Stein, C., Christian, A. H. & Levin, M. D. Carbon-to-nitrogen single-atom transmutation of azaarenes. Nature 623, 77–82 (2023).
Zhang, R. et al. Rhodium catalyzed tunable amide homologation through a hook-and-slide strategy. Science 382, 951–957 (2023).
Zippel, C., Seibert, J. & Bräse, S. Skeletal editing–nitrogen deletion of secondary amines by anomeric amide reagents. Angew. Chem. Int. Ed. 60, 19522–19524 (2021).
Unsworth, W. P. & Avestro, A. J. Nitrogen deletion offers fresh strategy for organic synthesis. Nature 593, 203–204 (2021).
Ouyang, K., Hao, W., Zhang, W.-X. & Xi, Z. Transition-metal-catalyzed cleavage of C–N single bonds. Chem. Rev. 115, 12045–12090 (2015).
Wang, Q., Su, Y., Li, L. & Huang, H. Transition-metal catalysed C–N bond activation. Chem. Soc. Rev. 45, 1257–1272 (2016).
Lemal, D. M. & Rave, T. W. Diazenes from Angeli’s salt. J. Am. Chem. Soc. 87, 393–394 (1965).
Kennedy, S. H., Dherange, B. D., Berger, K. J. & Levin, M. D. Skeletal editing through direct nitrogen deletion of secondary amines. Nature 593, 223–227 (2021).
Zou, X. D., Zou, J. Q., Yang, L. Z., Li, G. G. & Lu, H. J. Thermal rearrangement of sulfamoyl azides: reactivity and mechanistic study. J. Org. Chem. 82, 4677–4688 (2017).
Qin, H. T. et al. N-atom deletion in nitrogen heterocycles. Angew. Chem. Int. Ed. 60, 20678–20683 (2021).
Hui, C. G., Brieger, L., Strohmann, C. & Antonchick, A. P. Stereoselective synthesis of cyclobutanes by contraction of pyrrolidines. J. Am. Chem. Soc. 143, 18864–18870 (2021).
Holovach, S. et al. C−C coupling through nitrogen deletion: application to library synthesis. Chem. Eur. J. 29, e202203470 (2023).
Wright, B. A. et al. Skeletal editing approach to bridge-functionalized bicyclo[1.1.1]pentanes from azabicyclo[2.1.1]hexanes. J. Am. Chem. Soc. 145, 10960–10966 (2023).
Banks, T. M., Clay, S. F., Glover, S. A. & Schumacher, R. R. Mutagenicity of N-acyloxy-N-alkoxyamides as an indicator of DNA intercalation part 1: evidence for naphthalene as a DNA intercalator. Org. Biomol. Chem. 14, 3699–3714 (2016).
Glover, S. A. Anomeric amides—structure, properties and reactivity. Tetrahedron 54, 7229–7271 (1998).
Zeng, X. Q., Beckers, H., Bernhardt, E. & Willner, H. Synthesis and characterization of sulfuryl diazide, O2S(N3)2. Inorg. Chem. 50, 8679–8684 (2011).
Rieder, C. J. & Smith, M. V. An unexpected incident during the manufacture of O-(diphenylphosphinyl)hydroxylamine. Org. Process Res. Dev. 25, 2308–2314 (2021).
Jat, J. L. et al. Direct stereospecific synthesis of unprotected N-H and N-Me aziridines from olefins. Science 343, 61–65 (2014).
Jinan, D., Mondal, P. P., Nair, A. V. & Sahoo, B. O-protected NH-free hydroxylamines: emerging electrophilic aminating reagents for organic synthesis. Chem. Commun. 57, 13495–13505 (2021).
Khatib, A. A. & Sisler, H. H. Synthesis of dialkyltriazanium chlorides through chloramination reactions of dialkylamines. Inorg. Chem. 29, 3158–3161 (1990).
Newcomb, M. in Encyclopedia of Radicals in Chemistry, Biology and Materials (eds Armido Studer & Chryssostomos Chatgilialoglu) Ch. 5 (Wiley, 2012).
Herk, L., Feld, M. & Szwarc, M. Studies of ‘cage’ reactions. J. Am. Chem. Soc. 83, 2998–3005 (1961).
Back, T. G. & Kerr, R. G. Oxidation of 1,1-disubstituted hydrazines with benzeneseleninic acid and selenium dioxide. Facile preparation of tetrazenes. Can. J. Chem. 60, 2711 (1982).
Renault, A., Joucla, L. & Lacôte, E. Catalytic aerobic oxidation of hydrazines into 2-tetrazenes. Eur. J. Org. Chem. 14, e202200265 (2022).
Masson-Makdissi, J. et al. Evidence for dearomatizing spirocyclization and dynamic effects in the nitrogen deletion of tetrahydroisoquinolines. Preprint at ChemRxiv https://doi.org/10.26434/chemrxiv-2023-wwhbn (2023).
Berger, K. J. et al. Direct deamination of primary amines via isodiazene intermediates. J. Am. Chem. Soc. 143, 17366–17373 (2021).
Dherange, B. D. et al. Direct deaminative functionalization. J. Am. Chem. Soc. 145, 17–24 (2023).
Steiniger, K. A., Lamb, M. C. & Lambert, T. H. Cross-coupling of amines via photocatalytic denitrogenation of in situ generated diazenes. J. Am. Chem. Soc. 145, 11524–11529 (2023).
Monreal-Corona, R., Solà, M., Pla-Quintana, A. & Poater, A. Stereoretentive formation of cyclobutanes from pyrrolidines: lessons learned from DFT studies of the reaction mechanism. J. Org. Chem. 88, 4619–4626 (2023).
Jurczyk, J. et al. Photomediated ring contraction of saturated heterocycles. Science 373, 1004–1012 (2021).
Li, Y., Cheng, S., Tian, Y., Zhang, Y. & Zhao, Y. Recent ring distortion reactions for diversifying complex natural products. Nat. Prod. Rep. 39, 1970–1992 (2022).
Hui, C., Craggs, L. & Antonchick, A. P. Ring contraction in synthesis of functionalized carbocycles. Chem. Soc. Rev. 51, 8652–8675 (2022).
Zalessky, I. et al. A modular strategy for the synthesis of macrocycles and medium-sized rings via cyclization/ring expansion cascade reactions. J. Am. Chem. Soc. 146, 5702–5711 (2024).
Li, C.-J. & Chen, L. Organic chemistry in water. Chem. Soc. Rev. 35, 68–82 (2006).
Hong, B. K., Luo, T. P. & Lei, X. G. Late-stage diversification of natural products. ACS Cent. Sci. 6, 622–635 (2020).
Maskey, R. P., Kock, I., Helmke, E. & Laatsch, H. Isolation and structure determination of phenazostatin D, a new phenazine froma marine actinomycete isolate Pseudonocardia sp. B6273. Z. Naturforsch. B 58, 692–694 (2003).
Hashimoto, T. & Maruoka, K. Recent advances of catalytic asymmetric 1,3-dipolar cycloadditions. Chem. Rev. 115, 5366–5412 (2015).
Hui, C. & Antonchick, A. P. Methodology-driven efficient synthesis of cytotoxic (±)-piperarborenine B. Green Synth. Catal. 3, 339–348 (2022).
Na, H. & Mirica, L. M. Deciphering the mechanism of the Ni-photocatalyzed C‒O cross-coupling reaction using a tridentate pyridinophane ligand. Nat. Commun. 13, 1313 (2022).
Montà-González, G., Sancenón, F., Martínez-Máñez, R. & Martí-Centelles, V. Purely covalent molecular cages and containers for guest encapsulation. Chem. Rev. 122, 13636–13708 (2022).
Schick, T. H. G., Lauer, J. C., Rominger, F. & Mastalerz, M. Transformation of imine cages into hydrocarbon cages. Angew. Chem. Inter. Ed. 58, 1768–1773 (2019).
Acknowledgements
Financial support for this work was provided by the National Natural Science Foundation of China, 22071100 (H.L.) and 22271148 (H.L.).
Author information
Authors and Affiliations
Contributions
T.G., J.L. and H.L. designed the experiments. T.G., J.L., Z.C. and Z.W. performed the experiments and analysed the data. All authors participated in writing the manuscript. H.L. conceived and supervised the project.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Peer review
Peer review information
Nature Synthesis thanks the anonymous reviewers for their contribution to the peer review of this work. Primary Handling Editor: Thomas West, in collaboration with the Nature Synthesis team.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary information
Supplementary Information
Supplementary Figs. 1–55, characterization data and additional experimental details.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Guo, T., Li, J., Cui, Z. et al. C(sp3)–C(sp3) bond formation through nitrogen deletion of secondary amines using O-diphenylphosphinylhydroxylamine. Nat. Synth 3, 913–921 (2024). https://doi.org/10.1038/s44160-024-00559-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/s44160-024-00559-9