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STAligner enables the integration and alignment of multiple spatial transcriptomics datasets

We introduce STAligner — a graph neural network-based tool for the integration of multiple spatial transcriptomics datasets by generating batch effect-corrected embeddings, thereby enabling consensus spatial domain identification and accurate 3D tissue reconstruction.

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Fig. 1: Overview of STAligner.


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This is a summary of: Zhou, X. et al. Integrating spatial transcriptomics data across different conditions, technologies and developmental stages. Nat. Comput. Sci. (2023).

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STAligner enables the integration and alignment of multiple spatial transcriptomics datasets. Nat Comput Sci 3, 831–832 (2023).

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