Analyzing cellular barcoding data is challenging due to the absence of a flexible, complete and easy-to-use set of tools that can help scientists derive biological meaning from these datasets. barcodetrackR is a promising package for filling this gap in the field.
This is a preview of subscription content, access via your institution
Relevant articles
Open Access articles citing this article.
-
Connecting past and present: single-cell lineage tracing
Protein & Cell Open Access 19 April 2022
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$29.99 / 30 days
cancel any time
Subscribe to this journal
Receive 12 digital issues and online access to articles
$99.00 per year
only $8.25 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
References
Espinoza, D. A., Mortlock, R. D., Koelle, S. J., Wu, C. & Dunbar, C. E. Nat. Comput. Sci. https://doi.org/10.1038/s43588-021-00057-4 (2021).
Kebschull, J. M. & Zador, A. M. Nat. Methods 15, 871–879 (2018).
Morgan, M., Obenchain, V., Hester, J. & Pagès, H. SummarizedExperiment: SummarizedExperiment container. R package version 1.21.1. Bioconductor https://bioconductor.org/packages/SummarizedExperiment (2020).
Hrynaszkiewicz, I., Simons, N., Hussain, A. & Goudie, S. Preprint at https://doi.org/10.6084/m9.figshare.8223365.v1 (2019).
Bystrykh, L. V. & Belderbos, M. E. Methods Mol. Biol. 1516, 57–89 (2016).
Lyne, A.-M. et al. Exp. Hematol. 68, 15–20 (2018).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Rights and permissions
About this article
Cite this article
Adair, J.E., Enstrom, M.R. A key toolbox for cellular barcoding analysis. Nat Comput Sci 1, 251–252 (2021). https://doi.org/10.1038/s43588-021-00062-7
Published:
Issue Date:
DOI: https://doi.org/10.1038/s43588-021-00062-7
This article is cited by
-
Connecting past and present: single-cell lineage tracing
Protein & Cell (2022)