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SYSTEMS BIOLOGY

Redefining false discoveries in cancer data analyses

The nature of biological networks still brings challenges related to computational complexity, interpretable results and statistical significance. Recent work proposes a new method that paves the way for addressing these issues when analyzing cancer genomic data.

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Fig. 1: Overview of FDRnet, proposed by Yang and colleagues.

References

  1. Yang, L., Chen, R., Goodison, S. & Yijun, S. Nat. Comput. Sci. https://doi.org/10.1038/s43588-020-00009-4 (2021).

  2. Stratton, M. R., Campbell, P. J. & Futreal, P. A. Nature 458, 719–724 (2009).

    Article  Google Scholar 

  3. International Cancer Genome Consortium. Nature 464, 993–998 (2010).

    Article  Google Scholar 

  4. Garraway, L. A. & Lander, E. S. Cell 153, 17–37 (2013).

    Article  Google Scholar 

  5. Licata, L. et al. Nucleic Acids Res. 48, D504–D510 (2020).

    Google Scholar 

  6. Türei, D., Korcsmáros, T. & Saez-Rodriguez, J. Nat. Methods 13, 966–967 (2016).

    Article  Google Scholar 

  7. Signorelli, M., Vinciotti, V. & Wit, E. C. BMC Bioinform. 17, 352 (2016).

    Article  Google Scholar 

  8. Ciriello, G., Cerami, E., Sander, C. & Schultz, N. Genome Res. 22, 398–406 (2012).

    Article  Google Scholar 

  9. Mathews, J. C. et al. Proc. Natl Acad. Sci. USA 117, 16339–16345 (2020).

    Article  Google Scholar 

Download references

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Correspondence to Francesco Iorio.

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Competing interests

F.I. receives funding from Open Targets, a public–private initiative involving academia and industry and performs consultancy for the joint CRUK–AstraZeneca Functional Genomics Centre. All the other authors declare no competing interests.

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Najgebauer, H., Perron, U. & Iorio, F. Redefining false discoveries in cancer data analyses. Nat Comput Sci 1, 22–23 (2021). https://doi.org/10.1038/s43588-020-00008-5

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