Extended Data Fig. 3: Cell neighbours depend on cell phenotype. | Nature Cancer

Extended Data Fig. 3: Cell neighbours depend on cell phenotype.

From: Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer

Extended Data Fig. 3

a, Stacked bar plot depicting phenotypic composition of cell neighbours separately by each cell phenotype for all tumours. b, Stacked bar plots depicting the phenotypic composition of cells neighbouring all stromal phenotypes separately by IntClust subtype, illustrating patterns of stromal cell enrichment among IntClust subtypes (related to Fig. 4). c, Heatmap of median expression values for stromal cells based on both whole-cell and 3-pixel annular segmentation methods; rows and columns ordered by hierarchical clustering using Ward’s method.

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