Omental macrophages secrete chemokine ligands that promote ovarian cancer colonization of the omentum via CCR1

The omentum is the most common site of ovarian cancer metastasis. Immune cell clusters called milky spots are found throughout the omentum. It is however unknown if these immune cells contribute to ovarian cancer metastasis. Here we report that omental macrophages promote the migration and colonization of ovarian cancer cells to the omentum through the secretion of chemokine ligands that interact with chemokine receptor 1 (CCR1). We found that depletion of macrophages reduces ovarian cancer colonization of the omentum. RNA-sequencing of macrophages isolated from mouse omentum and mesenteric adipose tissue revealed a specific enrichment of chemokine ligand CCL6 in omental macrophages. CCL6 and the human homolog CCL23 were both necessary and sufficient to promote ovarian cancer migration by activating ERK1/2 and PI3K pathways. Importantly, inhibition of CCR1 reduced ovarian cancer colonization. These findings demonstrate a critical mechanism of omental macrophage induced colonization by ovarian cancer cells via CCR1 signaling. Krishnan et al. find that CCR1 ligands CCL6 and CCL23 secreted by murine and human macrophages, respectively, enhance metastatic colonization of ovarian cancer cells to the omentum in manner dependent on chemokine receptor 1 (CCR1). This study suggests that targeting CCR1 or CCL23 in ovarian cancer may be a therapeutic strategy.

O varian cancer is the seventh most common cancer in women with 300,000 new cases and 185,000 deaths worldwide in 2018 1 . In 2020, an estimated 21,750 new cases of ovarian cancer will be diagnosed in the USA and 13,940 women will die from the disease 2 . Ovarian cancer originates in the ovary or fallopian tube and metastasizes throughout the peritoneal cavity 3 . Metastatic disease, rather than the primary tumor, is the cause of ovarian cancer-related deaths 4 . However, the fundamental mechanisms that support intraperitoneal metastasis are not well understood.
The omentum is a preferred metastatic site for ovarian cancer cells. The majority of women diagnosed with high grade serous ovarian cancer present with omental metastases [5][6][7] . In experimental models of ovarian cancer, ovarian cancer cells metastasize to the omentum within 1-6 h of injection 8 . The omentum is an adipose tissue that contains secondary lymphoid structures with a variety of cell types, including adipocytes, blood vessels, and clusters of leukocytes known as milky spots [9][10][11][12][13][14][15] . Milky spots contain macrophages, B, T, and NK cells, which rapidly efflux into the peritoneum during pathogenic challenge 10,16 . While various cell types, including neutrophils, mesothelial cells, and adipocytes, have been shown to support ovarian cancer metastasis to the omentum, little is known regarding the role of tissueresident immune cells in omental metastasis 7,15,17 .
Macrophages enhance metastasis in several cancer models. In breast cancer, macrophages facilitate the early hematogenous dissemination of cancer cells from the primary tumor by altering vascular permeability and facilitating migration into the bloodstream 18 . Chemokines enhance the interactions between cancer cells and macrophages in a chemokine cascade that promotes breast cancer metastasis 19 . In ovarian cancer, macrophage-driven inflammation can promote intraperitoneal metastasis and ascites production 20 . Specific subsets of omental macrophages might be involved in promoting metastasis to the omentum 17 .
In this study, we describe the role of omental macrophagederived chemokine ligands in promoting ovarian cancer cell colonization of the omentum. Gene expression profiling of mouse omental macrophages compared to mesenteric adipose macrophages shows distinct gene expression patterns with significant upregulation of the chemokine ligand CCL6 prior to and during colonization of the omentum by ovarian cancer cells. CCL6 induces the migration of ovarian cancer cells as an important step in colonization via the chemokine receptor CCR1. Furthermore, inactivation of CCR1 in mouse ovarian cancer cells blocks CLL6 induced migration and abolishes their ability to colonize the omentum. In ovarian cancer patients, the expression of CCR1 is associated with a poorer prognosis. In addition, CCL23, the human homolog of CCL6, is expressed on macrophages isolated from human omentum. These observations validate the importance of CCR1 and its ligand CCL23 in human ovarian cancer.

Results
Omentum as a niche for ovarian cancer metastasis. The omental vasculature is characterized by the presence of numerous branching blood vessels ending in glomerulus-like capillary beds near the periphery of the omentum. Immune cells aggregate around and within these capillary beds to form milky spots. The milky spots contain clusters of monocytes (CD11b + ), B cells, macrophages, CD11c + cells, and T cells all under a gap in the mesothelial lining (Fig. 1a). The endothelial lining of the capillaries and the overlying mesothelium are adapted to facilitate the transmigration of immune cells. Additional structural elements are provided by, fibroblasts, mesenchymal cells, collagen, and elastic fibers (Fig. 1a).
To investigate the role of tissue-resident macrophages in metastatic colonization to the omentum, we first verified the presence of macrophages in milky spots in naive human and murine omentum (Fig. 1b, c). Interestingly, in omenta from ovarian cancer patients without gross disease, microscopic metastases were restricted to milky spots and were not observed in the adipose tissue at this early stage (Fig. 1b). Similarly, microscopic metastases in murine omentum were localized and confined to the milky spots at early timepoints (24 h) after intraperitoneal (i.p.) injection of ID8 cells (Fig. 1c).
We next studied the dynamics of intraperitoneal metastasis in our murine ovarian cancer model. ID8 murine ovarian cancer cells were injected i.p. into C57BL/6 mice and the anatomic distribution of metastatic colonization was followed over time. Interestingly, the omentum was the first site of macroscopic metastases within one week of injection and remained the only site of peritoneal metastasis for 6 weeks after which metastases appeared at other sites (Fig. 1d). This is similar to observations in patients with ovarian cancer who frequently present with omental metastasis upon diagnosis but may not have other sites of significant disease burden 5,6 . Milky spots increased in number and size after cancer cell colonization at week 1 post injection. The number of immune cells, in particular macrophages, was found to increase by week 2. We observed continued expansion of tumor from milky spots into the adipose tissue of the omentum following early colonization (Fig. 1e). These findings suggest that the immune cell-rich milky spots are sites of early metastasis of ovarian cancer cells within the omentum.
Macrophages promote ovarian cancer colonization of the omentum. Previous studies have demonstrated in both murine (ID8) and human ovarian cancer models (CaOV3, HeyA8, or SKOV3ip.1) that colonization of the omentum was independent of B-, T-, and NK-cells 21 . To determine the role of macrophages in omental colonization, we depleted macrophages in C57BL/6 and athymic nude mice using clodronate liposomes prior to i.p. injection of mouse ID8 or human SKOV3ip.1 ovarian cancer cells, respectively (Fig. 2a). Strikingly, we observed an 11-fold reduction in the ovarian cancer burden in the omentum of macrophage depleted mice at 7 days following i.p. injection of tumor cells (Fig. 2b). Interestingly, when macrophages were depleted using clodronate liposome three days after injection of SKOV3ip.1 cells, we failed to observe a decrease in omental colonization. (Supplementary Fig. 1). These findings support our hypothesis that macrophages are crucial for the initiation of ovarian cancer colonization of the omentum.
Omental macrophage-derived conditioned media promote migration of ovarian cancer cells. Our findings above indicate an important role for omental macrophages in metastatic colonization of ovarian cancer. Therefore, we investigated whether omental macrophages can induce migration of ovarian cancer cells as an important aspect of metastatic colonization. For this purpose, CD11b + cells were isolated from normal mouse omenta and cultured to generate conditioned media ( Supplementary  Fig. 2a). CD11b + cells isolated from murine gonadal fat were used for comparison since our prior studies had demonstrated a lack of early metastasis to intraperitoneal adipose outside of the omentum 21 . Conditioned media generated by CD11b + cells isolated from mouse omenta significantly increased migration of ID8 ovarian cancer cells ( Supplementary Fig. 2b). Compared to conditioned media from omental CD11b + cells, conditioned media from gonadal fat CD11b + cells had only minor effects on ovarian cancer cell migration. To validate these findings in human tissue, we isolated macrophages from human omentum collected from individuals with benign disease (CD45 + CD14 + CD68 + cells; Supplementary Fig. 3b). Similar to the effects shown in murine CD11b + cells, all human macrophage conditioned media significantly enhanced the migration of human SKOV3.ip1 cells ( Supplementary Fig. 2d). These findings suggest that omental macrophages secrete chemoattractants into the tumor microenvironment that enhance migration and, therefore, the metastatic potential of ovarian cancer cells.
RNA-sequencing of omental macrophage reveals distinct gene expression patterns. We next investigated the mechanisms that regulate the omental macrophage-induced colonization of the omentum. For this purpose, changes in gene expression were studied in macrophages during the omental colonization process. Macrophages (CD45 + /CD11b + /F4/80 + ) were isolated from mouse omenta prior to injection of ID8 cells, and 24 hours and seven days post-injection (dpi). RNA sequencing analysis was performed on   macrophages at the respective time points (Supplementary Fig. 3a). RNA isolated from mesenteric adipose tissue macrophages was used for comparison. Hierarchical clustering and principalcomponent analysis (PCA) of 12756 genes expressed by omental macrophages during intraperitoneal metastasis resulted in various important observations. First, naive omental macrophages showed a gene signature distinct from mesenteric adipose tissue-derived macrophages before injection of ID8 cells (1283 genes were differentially expressed between omentum and mesentery derived macrophages). Second, omental macrophages showed a significant change in gene expression after the injection of ID8 cells, while there was no change in the gene signature from mesenteric adipose tissue-derived macrophages. (Fig. 2c)  adhesion, immune response, cytokine-cytokine receptor interaction, and chemotaxis ( Supplementary Fig. 3c). Among the chemokines, CCL6 was found to be the gene with the highest fold upregulation in naive omental macrophages compared to naive mesenteric macrophages (timepoint zero). In addition, we observed a significant increase of CCL6 expression in omental but not mesenteric macrophages during colonization (Fig. 2d, e). Since CCL6 is expressed primarily by macrophages [22][23][24] , we hypothesized that macrophage-derived CCL6 might promote early omental metastasis by interaction with its receptor CCR1 expressed on ovarian cancer cells.
We validated the expression of CCL6 and CCL23 in flow-sorted mouse or human omental macrophages, respectively by qRT-PCR ( Fig. 2f, g). Conditioned media generated from naive mouse omenta contained high levels of secreted CCL6 (Fig. 2h). High levels of CCL23 were also detected in conditioned media from whole human omentum without tumor and human omentum derived macrophages (Fig. 2i). Immunofluorescence staining of tissue sections further confirmed the presence of CCL6-expressing F4/80 + macrophages in mouse omenta and CCL23-expressing CD68 + macrophages in human omenta (Fig. 2j, k).
CCL6 and CCL23 promote ovarian cancer migration. We hypothesized that CCL6 and CCL23 are important mediators of colonization in our mouse model and in human omentum respectively. Both chemokine ligands can induce migration which is a crucial aspect of colonization. Therefore, we investigated the ability of CCL6 and CCL23 to enhance migration of mouse and human ovarian cancer cell lines. Both murine ID8 and human SKOV3ip.1 cell lines showed a concentration-dependent migration toward CCL6 and CCL23 (Fig. 3a, b). This effect was not due to increased cell proliferation as neither ID8 nor SKOV3ip.1 cells cultured in serum-free medium in the presence of 100 ng/mL CCL6 or 200 ng/mL CCL23 showed differences in cell proliferation (Fig. 3c). Antibody-mediated neutralization of CCL6 abrogated the migration of ID8 cells toward mouse omentumconditioned media (Fig. 3d). Similarly, induction of SKOV3ip.1 migration toward conditioned media from human omentum was blocked by CCL23 neutralizing antibody (Fig. 3e).
To better understand the cellular mechanisms of CCL6 and CCL23 mediated migration, we performed microarray gene expression analysis on CCL6 treated ID8 cells. We found that CCL6 induced upregulation of 98 genes and downregulation of 108 genes. Upregulated genes were clustered in pathways that regulate cell migration, such as integrin-mediated cell adhesion, MAPK signaling pathway, and signaling by RhoGTPases (Supplementary Table 1). Among important regulators of migration, Myosin 9A (Myo9A), LIMK1, and Cofilin were significantly upregulated in CCL6 treated ID8 cells compared to untreated cells ( Supplementary Fig. 4a-c).
Phospho-proteomic profiling of CCL6 treated ID8 cells and CCL23 treated SKOV3ip.1 cells showed increased levels of pERK1/2 in both cell lines and increased pAkt in SKOV3ip.1 cells ( Supplementary  Fig. 4d, e). pERK1/2 and pAkt regulate migration in part by phosphorylating LIMK1 and p-Cofilin 25-28 ( Fig. 3f and Supplementary Fig. 4f-i). We confirmed the upregulation of p-cofilin by immunofluorescence in both ID8 and SKOV3ip.1 as early as 10 min post treatment with CCL6 and CCL23, respectively (Fig. 3g, h). We hypothesized that phosphorylation of ERK1/2 by CCL6 and CCL23 regulates MYO9A, which modulates downstream p-LIMK1 and p-Cofilin in the migration pathway (Fig. 3i). In vitro migration of ID8 and SKOV3ip.1 cells toward CCL6 or CCL23 was inhibited by pharmacologic targeting of MEK (trametinib) and PI3K pathway (BEZ235) respectively ( Fig. 3j-l). In addition, inhibition of Myosin-9 (blebbistatin) resulted in a two-fold decreased migration of both ID8 and SKOV3ip.1 cells toward CCL6 and CCL23, respectively (Fig. 3m, n). The concentrations of BEZ235, trametinib and blebbistatin used in the migration assays did not affect the viability of ovarian cancer cells ( Supplementary Fig. 4j-n). Our findings suggest that CCL6 or CCL23 induce migration by activating the ERK and PI3-Kinase pathways resulting in enhanced downstream signaling via MYO9A and p-Cofilin.
Genetic and pharmacological inhibition of CCR1 in human and mouse ovarian cancer cells reduces migration toward CCL6/CCL23. CCL6 and CCL23 signal through the CCR1 chemokine receptor. To determine the role of CCR1 in macrophageinduced omental colonization, we first verified the expression of CCR1 in ID8 and SKOV3ip.1 cells ( Supplementary Fig. 5a). CCR1 was expressed in ID8 and SKOV3ip.1 derived tumor tissue ( Fig. 4a, b). The functional importance of CCR1 in CCL6 and CCL23 induced migration was examined in ID8 and SKOV3ip.1 cells with deletion of CCR1 by CRISPR-Cas9. Deletion of CCR1 was verified by sequencing the targeted locus and by qRT-PCR for CCR1 expression ( Supplementary Fig. 5b-e). Induction of migration by CCL6 was completely abrogated in ID8-CCR1-null cells. (Fig. 4c). Similarly, CCR1-deleted SKO-V3ip.1 cells failed to respond to CCL23 induced migration (Fig. 4d). No differences in tumor cell proliferation or viability were observed in the CCR1-null cell lines relative to the parental cells ( Supplementary Fig. 5f, g). We next utilized a small molecule inhibitor of CCR1 (UCB35625) to investigate the therapeutic potential of CCR1 blockade in reducing ovarian cancer migration. CCR1 inhibition by UCB35625 blocked CCL6 and CCL23 induced migration of ID8 and SKOV3ip.1, respectively (Fig. 4e, f).
CCR1 knock-down in ovarian cancer cells reduces colonization of the omentum. We next studied if CCR1 is important in omental colonization by ovarian cancer cells in vivo. mRuby- Fig. 2 Ovarian cancer cell colonization of the omentum is macrophage dependent. a Experimental design of clodronate liposome treatment for 7 dpi of ID8/SKOV3ip.1 in vivo metastasis assay. b Representative omental images of IHC for lymphocytes (CD45), macrophages (F4/80) and cancer cells (pan-CK). Quantification of DAB (pan-CK) staining area for each model is shown on the right (*p < 0.05; n = 3). (c-e) c Principal-component analysis (PCA) of genes expressed in the omental (OM) and mesenteric (MY) adipose tissue macrophages. Each data point represents macrophages derived from three omenta (n = 3). d Heat map of all chemokines expressed in (c). e Plot of chemokine genes highly upregulated in naive omental macrophages compared to naive mesenteric macrophages (timepoint zero). f Gene expression analysis of CCL6 on mouse naive omental macrophages isolated from C57BL/6 mice (n = 2) by q-RT PCR. RAW 264.7 cells were used as positive control. g Gene expression analysis of CCL23 on human omental macrophages isolated from patient with benign disease (n = 2). PBMCs were used as positive control. h ELISA of CCL6 levels in conditioned media generated from weight matched naive omentum and peritoneal adipose tissues (n = 3). i ELISA of CCL23 levels on conditioned media generated from benign patient samples. Omental macrophages (hOM-Mϕ1, 2, and 3) and whole-omental-tissue (OC157, 158, and 159) each represent a different benign sample. Conditioned media derived from PBMCs were used as control. j Immunofluorescence staining for co-localization of CCL6 (red) and F4/80 (green) and nuclei (blue, DAPI) on naive omental tissue from C57BL/6 and athymic nude mice. k Similarly, CCL23 (red) and CD68 (green) on the human omentum derived from benign patient samples. (scale bar = 20 µm).
labeled ID8 parental cells and ID8-CCR1-null cells were injected i.p. into C57BL/6 mice. At 24 hours post-injection (hpi) and seven dpi, omenta were harvested and assessed for metastasis by histology and flow cytometry (Fig. 5a). Numerous foci of ID8 parental (control) cells were observed within the milky spots of the omentum 24 hpi and seven dpi. At both time points, omental tissue contained significantly less ID8-CCR1-null cells compared to ID8-CRISPR-control cells with a three-fold reduction at 24 h and a seven-fold reduction at 7 days post injection (Fig. 5b-d and Supplementary Fig. 6a-f).
We then determined whether CCR1 is associated with a more aggressive in vivo progression of tumor growth and its impact on survival. ID8-parental, ID8-CRISPR-Control, or ID8-CCR1-null cells were injected i.p. into mice. Mice injected with ID8-CCR1-    null cells had a significantly slower progression of tumor growth and longer survival compared to mice injected with ID8-CRISPR-Control or ID8 parental cells (Fig. 5e). After 9 weeks, all mice (n = 5/group) injected with ID8-parental cells had developed ascites and extensive peritoneal metastases (Fig. 5f). In contrast, none of the mice injected with ID8-CCR1-null cells had developed ascites or other signs of disease at this time point. The median overall survival (OS) for mice injected with ID8-CCR1-null cells was 156 days and, therefore, significantly longer compared to both ID8-parental (OS: 64 days) and ID8-CRISPR-Control (OS: 97 days) (Fig. 5e). The data generated in the ID8 tumor model suggests that deletion of CCR1 expression resulted in extended survival in vivo. To assess the levels of CCR1 in clinical samples, IHC of a tissue microarray showed that CCR1 was highly expressed in epithelial ovarian cancers across different subtypes, including serous, endometrioid, and clear cell histologies. Interestingly, borderline ovarian tumors, which typically have better prognosis compared to invasive ovarian cancer, did not show any significant expression of CCR1 (Fig. 5g). Based on gene expression data from a cohort of ovarian cancer datasets, including TCGA 29 , patients with high CCR1 expression had a shortened disease-free survival compared to patients with low CCR1 expressing tumors. CCR1 expression levels in stage I and II ovarian cancer patients showed a significant difference in median progression free survival of 37 months with high CCR1 compared to 96 months with low CCR1 expression (HR 2.13; p = 0.032) (Fig. 5h, i). These findings lend further support to the important effect of CCR1 on the oncological outcome of ovarian cancer patients.

Discussion
The current study, to our knowledge, identifies a novel mechanism of ovarian cancer colonization of the omentum mediated by chemokine ligands secreted by omentum resident macrophages. We demonstrate that macrophage secreted CCL6 or CCL23 promotes colonization of ovarian cancer cells to omental milky spots. Targeting of CCR1 in ovarian cancer cells leads to a significant reduction in migration and omental metastasis demonstrating the importance of CCR1 in ovarian cancer cell metastasis.
The role of macrophages or other immune-effector cells in ovarian cancer metastasis is still not well understood. We have previously demonstrated that ovarian cancer cells metastasize initially to milky spots in the omentum but not other intraabdominal adipose tissues including the mesentery that lack milky spots 21 . This pattern of early omental colonization was independent of the presence of B cells, T cells or NK cells based on studies in immune-deficient mice 21 . Our current study demonstrates that omentum resident macrophages promote early omental metastatic colonization. Gene expression profile of macrophages derived from the omentum demonstrated a tissuespecific pattern compared to other intra-abdominal adipose tissues. Macrophages in other organs including the lung or the liver are likewise characterized by specific gene signatures which convey important and specific functions in their respective tissue microenvironments 30 . Based on our data, omental macrophages secreted chemokine ligands support early metastasis of ovarian cancer cells providing a possible explanation for the frequent involvement of the omentum in ovarian cancer patients.
Chemokine ligands can exert a variety of effects on cellular proliferation, angiogenesis, and metastasis 31,32 . CCL6 and its functional human homolog CCL23 are predominantly expressed by macrophages, eosinophils, and neutrophils 33 . The expression of these chemokine ligands can be upregulated during cancer, peritonitis, and chronic rhinosinusitis [34][35][36] . CCL6 is a known chemoattractant for macrophages, and to a lesser extent, B cells, T-helper cells, and eosinophils 37,38 . It is able to promote innate immune response by NK cell activation in animal models of peritonitis 39 . IL-4, a known stimulant for an immune-suppressive-M2-macrophage subtype, induces secretion of CCL6 by macrophages 40 . Similarly, CCL23 is IL-4inducible in a STAT6-dependent manner 41 . In a mouse model of lung cancer, overexpression of CCL6 accelerated tumor growth, and increased metastatic spread 32 . Similarly, higher levels of CCL23 and its corresponding receptor CCR1 correlated with reduced metastasisfree survival of patients with breast cancer 42 .
The omental and intraperitoneal microenvironment, including ascites, contains a variety of chemokine ligands. CCL8 (MCP2), CCL13 (MCP4), CCL14 (HCC1), CCL15 (MIP5), and CCL16 (HCC4) bind to CCR1 albeit with different affinity and could, therefore, potentially promote colonization 35 . However, our experiments in omentum-macrophage-conditioned media underscore the importance of murine CCL6 and human CCL23. Neutralization of CCL6 and CCL23 in these complex environments with a large variety of other chemokine ligands completely abrogated the migration of ovarian cancer cells. We hence propose that the effects in vivo are mainly mediated by CCL6 and CCL23. Conversely, other chemokine receptors may play a role in promoting ovarian cancer cell metastasis to the omentum. CCL6, for example, can bind to CCR3 which has been implicated in metastasis 19 . Neither ID8 nor SKOV3ip.1 cells used in our study expressed CCR3, and we, therefore, excluded its role in the observed reduction of metastasis in CCR1 deleted cells. However, CCR3 is expressed in human ovarian cancer and might, therefore, be another important receptor to promote metastasis in patients 43 . Fig. 3 Ovarian cancer cells show enhanced migration toward CCL6/CCL23 by activating Myosin9 via the Cofilin signaling in vitro. a, b Transwell migration assay of ID8/SKOV3ip.1 cells toward varying concentrations of CCL6 and CCL23 with representative crystal violet staining. Statistical significance (*p < 0.05) was determined for all conditions versus the serum-free media control by ordinary one-way ANOVA analysis. c Quantitation of cell proliferation of ID8/SKOV3ip.1 cells in the presence of CCL6/CCL23 (100 ng/mL-200 ng/mL) by MTS assay. 10% FBS was used as the positive control. d, e Transwell migration assays with ID8 cells in the presence of anti-CCL6 (2.5 μg/mL and 5 μg/mL; n = 3) toward mouse omental conditioned media and SKOV3ip.1 cells toward human omental conditioned media in the presence of anti-CCL23 (2.5 μg/mL-5 μg/mL; n = 3). Statistical significance was determined by two-way ANOVA analysis for each condition corresponding to the serum-free (SF) control (*p < 0.05). f Western blot analysis of ID8 treated with CCL6 (200 ng/mL) and SKOV3ip.1 treated with CCL23 (200 ng/mL) (n = 3). g, h Immunofluorescence staining for phospho-cofilin (red), actin cytoskeleton (green), and nuclei (blue, DAPI) on ID8 and SKOV3ip.1 ovarian cancer cells treated with CCL6 or CCL23, respectively, at different time points (n = 3); (scale bar = 20 µm). i Schematic representation of the CCR1-CCL6/CCL23 signaling pathway leading to increased migratory potential of the ovarian cancer cells. j Transwell migration assay of SKOV3ip.1 toward CCL23 treated with BEZ235 (PI3K Inhibitor) (**p < 0.008). k, l Transwell migration assay of ID8 toward CCL6 and SKOV3ip.1 cells toward CCL23 treated with trametinib (MEK inhibitor). m, n Transwell migration assay of ID8 toward CCL6 and SKOV3ip.1 cells toward CCL23 treated with blebbistatin (myosin inhibitor). Statistical significance was determined by two-way ANOVA analysis with Tukey's multiple comparison t-test with each condition compared to the 200 ng/mL CCL23 treatment condition.
COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-020-01246-z ARTICLE COMMUNICATIONS BIOLOGY | (2020) 3:524 | https://doi.org/10.1038/s42003-020-01246-z | www.nature.com/commsbio A role for CCR1 in cancer metastasis has been suggested in other studies, but not in the context of ovarian cancer or mediated by omental macrophage-derived CCL6/CCL23. CCR1 expression was found to increase in colon cancer cells during metastasis to the liver 44 . In a separate study, CCR1 sustained liver metastasis by promoting local recruitment of bone marrow (BM)derived cells that secrete the MMP9 and MMP2 metalloproteinases required for tissue invasion 45 . Activation of EGFR signaling via CCR1 has been shown to contribute to breast cancer invasion and metastasis 46 . The CCR1 mediated interaction between macrophages and breast cancer cells induced a chemokine cascade that enhanced metastasis 19 . CCR1 activation enhanced the interaction between "metastasis associated macrophages" (MAM) and cancer cells in part through integrin α4 resulting in increased extravasation of cancer cells and metastasis 47 . In a study by Zhu et al., osteopontin (OPN) was found to upregulate CCR1 expression in hepato-cellular carcinomas. CCR1 knockdown resulted in reduction of migration, invasion and pulmonary metastasis induced by OPN in vitro and in vivo 48 15 . A unique subset of omental tissue-resident macrophages (CD163 + Tim4 + ) can promote a premetastatic niche in the omentum 17 . Other studies have focused on the attachment of ovarian cancer cells to mesothelial cells that outline the peritoneal cavity. This process is regulated by multiple adhesion molecules, proteases and extracellular matrix components 50,53 . Fibronectin receptors like α5β1-integrins, for example, are expressed on the surface of ovarian cancer cells and mediate the adhesion through myosin-mediated traction forces 54 . Furthermore, TGF-β secreted by cancer cells activates a RAC1/SMAD-mediated signaling pathway in mesothelial cells, which results in transcriptional upregulation of the fibronectin gene and induces an EMT-like phenotype in mesothelial cells 50 . The adhesion of cancer cells to the mesothelium is followed by mesothelial clearance 3,51 . In this process, mesothelial cells are displaced by ovarian cancer spheroids followed by invasion of cancer cells into the deeper layer of peritoneal tissues 54 . Specifically, hypoxic signaling increased expression of lysyl oxidase (LOX) in mesothelial and ovarian cancer cells to promote collagen crosslinking and tumor cell invasion 52 . Further, during ovarian cancer progression, omental adipocytes provide fatty acids as an energy source to ovarian cancer cells 7 . Based on our current work and the published literature, we propose a multi-step model for omental colonization. Mesothelial cells promote ovarian cancer cell adhesion to the omentum. Subsequent migration and homing to milky spots is induced by omental resident macrophages via chemokine ligands. The interaction between macrophages and cancer cells creates an inflammatory environment that recruits other immune-effector cells, including neutrophils. The formation of NETs further enhances colonization of ovarian cancer cells. Adipocytes then provide the energy required for the continuous growth of tumor cells. Further studies are needed to explore this complex process and identify opportunities for therapeutic interventions.
Patient samples. Omenta were obtained from patients under approved IRB protocol at the Dept. of Obstetrics and Gynecology, Stanford Hospital. Informed consent was obtained from each patient prior to sample collection. Omental specimens with HGSC and omenta derived from patients with benign disease were obtained and processed for histological analysis and in vitro assays as described below.
Mice. All mice were housed, maintained, and euthanized according to APLAC protocol and under the supervision of the Stanford Animal Resource Center. 6-8 weeks, female, inbred C57BL/6 (C57BL/6NHsd; immunocompetent) and nude (Athymic Nude-Foxn1nu; T-cell deficient) mice were obtained from Harlan Laboratories (Indianapolis, IN). All animal studies were performed in accordance with Stanford APLAC approved protocols. All mice were randomly assigned to appropriate treatment groups.
In vivo experimental metastasis assays. Exponentially growing untagged or mRuby tagged-ID8 parental, ID8-CCR1-null cells, ID8-CRISPR-control cells were trypsinized and prepared as a single-cell suspension at a concentration of 2 × 10 6 cells/ mL in ice cold PBS. Animals were injected intraperitoneally with 500 μL of the cell suspension (1 × 10 6 cells). For all experiments, 500 μL of PBS was injected as a negative control in a parallel group of control mice. At the experimental endpoint (24 h or 7 dpi) of each assay, mice were euthanized in accordance with APLAC protocol via CO 2 asphyxiation and a secondary method of cervical dislocation was performed. For the time course experiment, grossly visible overt peritoneal metastases that were greater than 1 mm, from each mouse, were counted. Tissues were then harvested, processed, sectioned, and stained as described in "Methods".
Macrophage depletion using clodronate liposomes. For both pre-cancer and postcancer injection experiments, peritoneal macrophages were depleted by injection of clodronate-containing liposomes (clodronateliposome.org). In vivo depletion of macrophages was assessed for several dosages by cytology performed on omental dissociated cells and by flow cytometry with F4/80 antibody. A dose of 100 μL of liposomes diluted in PBS was selected and administered i.p. to mice every alternate day. Control mice were administered either PBS as a control for unstimulated macrophages or saline liposomes to control for any nonspecific effects of liposome administration. Macrophage depletion was maintained during the experimental period.
Isolation of murine and human omental macrophages. Omenta excised from C57BL/6 mice (n = 9) and processed as three separate groups (n = 3 per group). A modified protocol of the adipose tissue dissociation kit (130-105-808, Miltenyi Biotech) was used to obtain a single cell suspension of the mouse omenta. Human omental samples were processed using the human tumor dissociation kit (130-095-929, Miltenyi Biotech) to dissociate soft tumors into a single cell suspension. The cells were ACK lysed and re-suspended in PBS containing 1% FBS for flow cytometry applications to analyze and sort for mouse or human omental macrophages.
Antibodies and flow cytometry. The isolated mouse and human omental cells were re-suspended in PBS supplemented with 1% FBS. The mouse panel designed to sort for murine omental macrophages included CD45-FITC (clone-30-F11, eBioscience), CD11b-APC (clone-M1/70, eBioscience), F4/80-PE (clone-BM8, eBioscience). Similarly, the human panel designed to sort for human omental macrophages included CD45-FITC (clone-HI30, eBiosciences), CD14-PE (clone-61D3, eBioscience), CD68-PECy7 (Clone-eBioY1/82A, eBioscience). In both the mouse and human flow panel, aqua amine (L34957, Fisher Scientific) was used as the Live/Dead stain and Compensation Beads (01-1111, eBioscience) were used for compensation controls. Labeled cells were sorted by flow cytometry on a BD InfluxFlow Sorter or analysis was performed on BD LSR II at Stanford shared FACS facility. For the RNA-seq analysis, CD45+CD11b+F4/80+ cells were sorted into buffer RLT and were processed immediately for RNA isolation. Fig. 5 Colonization of the omentum is disrupted by CCR1 knock-down in the cancer cells. a Schematic of experimental design for the 24hpi and 7dpi of ID8 in vivo metastasis assay. b Representative sections of omenta collected at 24 hpi and 7 dpi of stained for CK8/18 by IHC (scale bar = 100 µm). c Quantification of DAB staining area as an indicator of ID8 cancer cell burden in omental tissues. d Quantitation of flow cytometry analysis of ID8-mRUBY cells colonizing omentum at 24 hpi and 7 dpi (*p < 0.05). e Kaplan-Meier curve showing percent-survival after i.p injection of ID8-parental, CRISPR-Control, or CCR1-null cells (**p < 0.001) (n = 6/group). f Representative H&E stained peritoneal tissues at experimental end point. H&E images of ID8-CCR1-null group are from mice euthanized at 97 days, the experimental end point of the ID8-CRISPR-Control group. (scale bar = 100 µm). g Examples of 3 patient cores of endometrioid histology from a tissue microarray stained for CCR1 and IHC quantitation of CCR1 levels in a tissue microarray with different ovarian cancer histologies (****p < 0.0001). h, i Kaplan-Meier survival analysis (log-rank test) of CCR1 expression on progression free survival of serous ovarian cancer patients in h all stages and i stages I and II.
RNA sequencing and analyses. For each sample in the whole transcriptome sequencing library, 43-66 million 75-basepair paired-end reads were acquired from the sequencer. Read quality was determined with FastQC 0.11.4. The reads were aligned to the mouse reference genome (NCBI37/mm9) using STAR 2.4.2a, with splice junctions defined by the GTF file (UCSC). On average, 93% of reads were aligned to the reference genome, and 87% of reads uniquely aligned to the reference genome. Gene expression in raw count was determined by STAR with quant mode, GeneCounts setting. Cufflinks 2.2.1 was used to normalize gene expression in fragments per kilobase per million aligned reads (FPKM). Further, differential expression between the conditions was evaluated using DEseq2 1.12.4. The fold change between each sample is calculated using DEseq2. The genes that were either upregulated 2-fold or downregulated 2-fold were selected for gene set enrichment analysis using DAVID (https://david.ncifcrf.gov/) with gene set annotation GO BP and KEGG database. The top 10 gene sets are only used for visualization.
CRISPR/Cas9 genome editing. Human (AACTTGTAGTCGATCCAGAA) and murine (GAACACTAGAGAATACAGG) CCR1 sgRNA sequences were identified using the Broad Institute Genetic Perturbation Platform Web Portal's sgRNA design tool 55 . Control non-targeting sequences for human (ACGGAGGCTAA GCGTCGCAA) and mouse (GCGAGGTATTCGGCTCCGCG) were taken from the non-targeting sequences in the human and mouse GeCKOv2 libraries 56 . Oligoduplexes were cloned into pLentiCRISPRv2 (a gift from Feng Zhang; Addgene plasmid 52961 56 ) and transformed to Stbl3 bacteria. pLentiCRISPRv2 vectors containing the sgRNA guides were transfected with pMD2.G and pSPAX2 (gifts from Didier Trono; Addgene plasmids 12259 and 12260) to 293T cells using Fugene (Roche) in order to produce lentiviral vectors. After 24 h of culture, supernatants were collected, filtered through a 0.45 μm filter and added to monolayers of either ID8 (mouse) or SKOV3ip.1 (human) cell lines. Transduced ID8/SKOV3ip.1 cells were then selected in medium containing 0.6/0.4 µg/mL puromycin for 1 week and individual clones were selected by limiting dilution and then expanded in puromycin containing media.
To characterize the specific lesion in each cell line, PCR products were Topo cloned (Life Technologies) and 10 colonies from each isolated cell line was sequenced.
Cell proliferation assays. For cell proliferation assays, cells were seeded in 96-well plates (1.5 × 10 3 cells/well). At the indicated time points, cell proliferation was detected by MTS assay (Promega, G3530) according to the manufacturer's instructions. Data are shown as mean ± s.d. from three independent experiments.
Real-time RT-PCR. Total RNA was isolated with the RNeasy kit (Qiagen) and reverse-transcribed into cDNA using the Superscript Strand III cDNA SuperMix (Invitrogen). Real-time PCR was performed using SSO Fast Evergreen Supermix (Biorad) on an Applied Biosystems 7500 Fast Real-Time PCR System at Functional Genomics Facility at Stanford. Expression of the target genes were normalized to the housekeeping gene 18S. Mouse RAW 264.7 cells and human PBMC were used as a positive control for the all the gene expression studies.
The target gene-specific primers were obtained from Integrated DNA Technologies (IDT). The primer sequences used in this study are shown in Supplementary Table 2. All real-time RT-PCRs were performed in triplicates and the relative mRNA expression of each target gene was determined by using the formula 2 −ΔCT (C T , cycle threshold) where ΔC T = C T (target gene) − C T (18S). The comparative expression level of each target gene between different samples was 2 −ΔΔCT .
Generation of tissue and cell conditioned media. Three freshly excised mouse omenta were pooled and processed to produce a single cell suspension with minimal cell loss. Gonadal fat was similarly processed in parallel. Macrophages (CD11b + cells) were isolated from stromal and vascular cells (SVC) by positive selection using CD11b microbeads (Miltenyi Biotech) ( Supplementary Fig. 2). To assess the functional phenotype, 1 × 10 6 cells were plated and allowed to condition serum-free media for 24 h after which the media were used in standard transwell migration assay.
Transwell migration assays Toward chemokines CCL6/CCL23. For cell migration assays, 1.5 × 10 5 (ID8) or 3 × 10 5 (SKOV3ip.1) cells in serum-free media were plated in the top chamber of 8.0μm 12-well plate transwell insert (12-well format, 8-μm pore; BD PharMingen). CCL6 (250-06, Peprotech) CCL23 (300-29, Peprotech), or omental conditioned medium was added to the bottom well of the plate (35-3503, BD Falcon) as chemoattractant. Anti-CCL6 (MAB000487, R&D systems) and anti-CCL23 (MAB371, R&D systems) antibodies were added to omentum-conditioned media in neutralization experiments. For pharmacological Inhibition, CCR1 inhibitor-UCB35625 (2757, Tocris), PI3K inhibitor-BEZ235 (S1009, Selleckchem), MEK inhibitor-trametinib (S2673, Selleckchem) and myosin inhibitor-blebbistatin (1760, Tocris) were used for the migration assays. Analysis was performed on each sample in triplicate. Cells were incubated for a period of 16 h overnight in a 37°C incubator (5% CO 2 ). After incubation, the top and the bottom chambers were washed with PBS and cells were fixed with 4% paraformaldehyde for 10 min. After washing with PBS, the cells were stained with 0.05% Crystal Violet for 40 min. Both the chambers were then washed with tap water and the cells on the top of the insert were gently scraped with a cotton swab. The positive-staining cells adherent to the bottom of the transwell, were examined under the microscope. Data are shown as mean ± s.d. from three independent experiments.
Phospho-protein array. Protein lysates isolated from ID8 and SKOV3ip.1 cells stimulated with CCL6 or CCL23 at 30 min time points were processed and assayed using the proteome-profiler human phospho-kinase array (#ARY003B, R&D Systems) according to manufactures protocol. Membranes were incubated with protein lysates of ID8 (500 μg) or SKOV3ip.1 (250 μg) for each condition, respectively. The membranes were imaged by Chemiluminescence by using LICOR Odyssey Clx imaging system. Protein bands were semi-quantified using the Image studio software (Windows application VIO.02), using normalization controls as per the manufacture's protocol.
Immunohistochemistry. Slides were first deparaffinized with xylene treatment for 60 min, 30 min, and 10 min three times each. Slides were then rehydrated, and antigen retrieval was performed in 1× citrate buffer (pH 6.0) for 5 min in a conventional steamer. Slides were incubated in a blocking buffer solution (Protein block serum-free ready-to-use, DAKO) for 60 min at room temperature. After standard slide preparation as described above, slides were incubated with primary antibody overnight and subsequent secondary antibodies (Supplementary Table 1). After washing, slides were either developed for immunohistochemistry or incubated with DAPI and imaged using an EVOS Fluorescence microscope. Level of CCR1 on patient tissue core samples on a tissue microarray was determined by HALO image analysis software area quantification algorithm (Indica Labs, Corrales, NM).
Statistics and reproducibility. All grouped data are presented as mean ± s.e.m. Significance between groups was analyzed by one-way ANOVA or Student t-test using GraphPad Prism. KM plotter (https://kmplot.com/analysis/) was used to analyze the prognosis of CCR1 in ovarian cancer. The analysis was conducted for all serous samples with an 'auto-select best cutoff' feature. The data with statistical analyses were performed with biological replicates on different samples of the same cell type on different days, yielding similar results. The number of biological replicates is included in the figure legends. Human CCL23 ELISA data shown in Fig. 2i is plotted as separate data points to show inter-patient variability.
Reporting summary. Further information on research design is available in the Nature Research Reporting Summary linked to this article.

Data availability
Raw data and analyzed data for the RNA-sequencing and microarray gene expression analysis can be accessed from Gene Expression Omnibus using the accession number GSE153685 and GSE153790, respectively. Source data are available in Supplementary Data 1. All other data are available from authors on reasonable request.