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Copper-catalysed amination of alkyl iodides enabled by halogen-atom transfer

Abstract

Despite the fact that nucleophilic displacement (SN2) of alkyl halides with nitrogen nucleophiles is one of the first reactions introduced in organic chemistry teaching, its practical utilization is largely limited to unhindered (primary) or activated (α-carbonyl, benzylic) substrates. Here, we demonstrate an alternative amination strategy where alkyl iodides are used as radical precursors instead of electrophiles. Use of α-aminoalkyl radicals enables the efficient conversion of the iodides into the corresponding alkyl radical by halogen-atom transfer, while copper catalysis assembles the sp3 C–N bonds at room temperature. The process provides SN2-like programmability, and application in late-stage functionalization of several densely functionalized pharmaceuticals demonstrates its utility in the preparation of valuable N-alkylated drug analogues.

Main

Nitrogen-rich molecules form the structural basis of almost every pharmaceutical and agrochemical lead, as well as many other high-value products like food additives and organic materials1. A large fraction of these chemotypes contain bonds between nitrogenated residues and saturated carbons, which makes the development of methods for sp3 C–N bond construction integral to both academia and industry (Fig. 1a)2,3,4.

Fig. 1: Relevance and assembly of sp3 C–N bonds.
figure 1

a, Molecules containing sp3 C–N bonds are widespread among many high-value materials. However, these bonds are still challenging to assemble. b, Analysis of substitution reactions involving N-nucleophiles and alkyl halides. c, The use of copper catalysis in the amination of unactivated alkyl halides is hampered by the initial SET reduction. Here we demonstrate that XAT using α-aminoalkyl radicals can be used to bypass this issue and enable catalytic sp3 C–N bond formation.

One classical method is N-alkylation with alkyl (pseudo)halides using textbook SN2 (bimolecular nucleophilic substitution) chemistry; however, this reactivity has major limitations in complex molecular settings5. Indeed, while substitutions on primary substrates are easy to perform, extension to secondary and tertiary substrates is challenging due to their increased steric hindrance. The requirement for forcing conditions (strong bases, high temperatures) often results in low yields and leads to competitive E2-elimination to alkene by-products. The intrinsic difficulties in SN2 reactivity are underscored by the fact that, among all the N-nucleophilic substitutions reported in the literature, 93% take place on primary alkyl halides and only 6% and 1% involve secondary and tertiary substrates, respectively (Fig. 1b and Supplementary Fig. 30). Furthermore, the limited pool of substitutions at secondary centres is largely biased towards the use of activated electrophiles (for example, benzylic, α-carbonyl), making the frequency of nucleophilic displacement at unactivated secondary halides <1.5%. As a result, the preferred route to assemble C–N bonds on secondary sp3 centres is largely based on the use of ketones via reductive aminations6,7, but this is only feasible for the reaction of alkylamines and cannot be extended to other valuable N-nucleophiles such as azoles, amides and carbamates.

The limitations of these polar approaches have recently triggered the exploration of alternative reactivity modes based on radical chemistry. In this context, copper catalysis has demonstrated a unique versatility in orchestrating coupling reactions involving carbon-radical intermediates5,8. The success of these transformations generally relies on the ability of Cu(ii) complexes to trap carbon radicals at near diffusion-controlled rates9, and then undergo facile reductive elimination from the resulting high-valent Cu(iii) species10. The potential of these two elementary steps to assemble a broad array of sp3 C–Y bonds (Y = C, N, O, S, halogen) represents a powerful opportunity for modular fragment coupling11.

Despite these prominent features, copper catalysis has seen limited applications to the amination of unactivated alkyl halides12,13. As shown in Fig. 1c, the overall amination using a [Cu(i)–amido] species would require initial single-electron transfer (SET) reduction of the halide, followed by radical capture to give the [alkyl–Cu(iii)–amido] complex that undergoes fast reductive elimination. Although radical recombination and reductive elimination are very facile, the low reduction potential of unactivated alkyl halides (Ered < −2 V versus saturated calomel electrode (SCE)) thwarts their activation by Cu(i), ultimately limiting synthetic applications. This lack of reactivity contrasts with the ubiquitous applicability of activated substrates, such as α-carbonyl and benzylic halides14,15, that are much easier to reduce (Ered > −1.5 V versus SCE) and therefore readily engage in Cu-catalysis.

In an effort to address this issue, two main approaches have emerged in recent years, both relying on the use of photochemistry to aid the radical generation step. Fu and Peters reported pioneering works using photochemistry to engage unactivated alkyl and aryl halides in C–N bond formations16,17,18. In these examples, photoexcitation of the transient amido–Cu(i) complex (amido = carbazole, indole, amide) is required to access a highly reducing species from which SET reduction of the organic halides is possible. This strategy, which hinges on the photochemical performance of the amido–Cu(i) complex and is therefore highly dependent on the N-nucleophile structure, activates the alkyl halide by SET and often requires high-energy UV-light irradiation ( = 254 nm)19.

An alternative avenue for copper-catalysed aminative cross-coupling relies on the combination with visible-light photoredox catalysis and the use of carboxylic acids or their activated derivatives as alkyl radical precursors20,21,22. In these cases, radical generation by SET reduction is facile (Ered > −1.5 V versus SCE), but the extension of this approach to unactivated alkyl halides is challenging.

Overall, the limited capacity to access strong reducing species remains the key element restricting general application of copper catalysis in amination chemistry. From this perspective, a strategy able to circumvent the problematic alkyl halide SET reduction, while still benefitting from the ability of copper to forge sp3 C–N bonds by reductive elimination, might provide a powerful tool towards achieving the assembly of complex nitrogenated motifs.

Recently, ourselves23,24 and the group of Doyle25,26 have demonstrated that alkyl radicals can be accessed from the corresponding halides by exploiting the ability of α-aminoalkyl radicals to trigger halogen-atom-transfer (XAT) reactions. This blueprint for radical generation is facilitated by the interplay of strong polar effects in the transition state of the halide abstraction step27 and can be used as part of C–C bond-forming strategies such as Giese alkylation and Heck-type olefination. We recently questioned if this reactivity mode could be integrated with copper catalysis to enable sp3 C–N bond formation. Such a strategy would benefit from a carbon–halogen bond-activation step occurring outside the copper cycle, independently from the nature of the N-nucleophile and also obviating for the need for additional photocatalysis.

In this Article, we describe the successful realization of this proposal and demonstrate that integration of α-aminoalkyl-mediated XAT with copper catalysis is a practical and effective tool to achieve the amination of secondary alkyl iodides. This mode for sp3 C–N bond formation is fast, operates under mild conditions, display broad functional group tolerance and can be used in the late-stage functionalization of complex bioactive materials.

Results

Reaction design and optimization

A detailed description of the reaction design for this XAT–Cu-mediated amination is provided in Fig. 2a using the coupling of 4-iodo-N-Boc-piperidine 1 with 3-chloroindazole 2. Starting with a Cu(i) catalyst, base-aided azole coordination is expected to afford the [Cu(i)–2] complex A. At this stage, we postulated that the known ground-state SET between Cu(i) and a peroxide B could be used to simultaneously obtain a [Cu(ii)–2] complex C and an electrophilic O-radical, D28. This species would have the appropriate philicity and reactivity profile to undergo HAT selectively at the α-N position of alkyl amine E29. The activated nature (bond-dissociation energy (BDE) = 91 kcal mol−1)30 and hydridic character of this C–H bond should lead to a polarity-matched process resulting in the α-aminoalkyl radical F. This species is the key agent for the homolytic activation of iodide 1 through XAT and would generate the alkyl radical G (and iminium H). At this point, fast capture of radical G by C would provide the high-valent [alkyl–Cu(iii)–2] species I from which reductive elimination is facile. This last step would forge the targeted sp3 C–N bond in 3 and regenerate the Cu(i) catalyst.

Fig. 2: Development of a coupling between alkyl iodides and N-nucleophiles by merging XAT and copper catalysis.
figure 2

a, The proposed mechanism for the amination of secondary alkyl iodides requires the merging of copper catalysis and XAT reactivity. b, Optimization of the amination process between iodide 1 and N-nucleophile 2 and relevant control reactions. c, UV–vis absorption spectroscopy studies support the individual steps in the catalytic cycle. d, Experiments probing the ability of alkyl radicals to undergo amination by reacting with [Cu(ii)–N-nucleophile] species.

The realization of this approach is not without challenges, as it requires the synchronized interplay of SET → HAT → XAT steps. Indeed, examination of this mechanistic pathway revealed three major aspects potentially hampering reactivity. Because α-aminoalkyl radicals are electron-rich species (Eox ≈ −1.1 V versus SCE)29, XAT needs to be faster than both oxidation of F by peroxide B (leading to H) and also capture of F by the Cu(ii) species C, which would result in aminal-type by-products (Supplementary Figs. 27 and 28). Furthermore, radical capture of alkyl radical G by C needs to outcompete a potential H-abstraction from amine E, which would result in dehalogenation (Supplementary Fig. 29).

With this mechanistic picture in mind, the model reaction between iodide 1 and azole 2 was evaluated. After screening of reaction conditions, we identified an effective protocol leading to the formation of 3 in high yield in just 1 h at room temperature (Fig. 2b). This process uses [Cu(CH3CN)4]PF6 as the catalyst, n-Bu3N as the α-aminoalkyl radical precursor, trimethylsilyl (TMS)-protected cumyl peroxide (cumOOTMS) as the oxidant and BTMG (2-tert-butyl-1,1,3,3-tetramethylguanidine) as the base (pKa = 26.5) in CH3CN–t-BuOH solvent. Full details on the optimization are discussed in the Supplementary Methods, but some experiments were of high relevance. Control reactions demonstrated that all components (copper catalyst, amine, oxidant and base) were required to obtain the product (entries 2–5, Fig. 2b). Although n-Bu3N provided the highest reaction yield, other amines were compatible as long as they led to the generation of an α-aminoalkyl radical (entries 6 and 7). The coupling was also efficient at 0 °C (entry 8), which is in contrast with the high temperatures (T > 100 °C) generally required in processes based on Cu/peroxide systems for sp3 C–H functionalization31,32. Finally, the use of supersilane33, which is frequently adopted as XAT reagent in both classical radical chemistry as well as modern photoredox-based approaches34, resulted in low yields owing to competitive dehalogenation (entry 9).

In terms of reproducibility and scalability, the process was insensitive to the presence of water and was run in the laboratory of AstraZeneca up to multi-gram scale (20 mmol), providing similar yields of 3 (entry 10). Peroxides are often problematic reagents due to their potentially exothermic decomposition. Before scale-up, safety assessments performed at AstraZeneca demonstrated that cumOOTMS can be handled safely and does not have explosive properties (differential scanning calorimetry analysis showed an exotherm at T > 107 °C), thus alleviating the initial concerns associated with the scale-up of this methodology (Supplementary Methods).

Mechanistic studies

Under our reaction conditions, α-aminoalkyl radical F is generated by HAT on n-Bu3N. The inclusion of additives with weaker and hydridic C–H bonds should therefore interfere with this step and, by outperforming the amine in the reaction with D, suppress the coupling process31. Indeed, when 5.0 equiv. of 9,10-dihydroanthracene 4 (BDEC–H = 76 kcal mol−1)35 or the Hantzsch ester 5 (BDEC–H = 69 kcal mol−1)36 were incorporated, no product was detected and the alkyl iodide was largely recovered (Fig. 2b, entries 11 and 12). Together with the lack of reactivity observed when amines without α-N C–H bonds were employed (for example 1,4-diazabocyclo[2.2.2]octane, DABCO) (Supplementary Information), these competition experiments prove the fundamental role of F in the C–I bond-activation step.

Next, we sought to use UV–vis absorption spectroscopy to obtain further information on some of the individual steps involved in the copper catalytic cycle (Fig. 2c). When a colourless solution of [Cu(MeCN)4]PF6 was treated with 2 in the presence of BTMG, a pale yellow solution was formed. The formation of [Cu(i)–2] A was possible only in the presence of the base, as also confirmed by 1H NMR spectroscopy (Supplementary Fig. 13). The addition of alkyl iodide 1 to this solution did not lead to any significant change in the UV–vis spectrum, and the foreseen lack of reactivity between A and 1 was also demonstrated by stoichiometric experiments (Supplementary Figs. 14 and 15). By contrast, addition of cumOOTMS resulted in an immediate colour change to dark green, which corresponded to the appearance of a new absorbance band centred at ~600 nm, matching those reported for other amido–[Cu(ii)] complexes37,38. This supports the formation of [Cu(ii)–2] C, as further confirmed by comparison with a sample of [Cu(ii)–2] complex (obtained by mixing Cu(OTf)2 + 2 + BTMG) (Supplementary Figs. 14 and 15).

Finally, to validate the last step of the copper catalytic cycle, we studied the stoichiometric reaction of C with alkyl radicals generated by thermal decomposition of lauroyl peroxide 6. As shown in Fig. 2d, the successful formation of 7 provides evidence supporting the proposed radical metallation on [Cu(ii)–2], followed by reductive elimination that complete our proposed mechanism for sp3 C–N bond assembly31.

Substrate scope

The optimized reaction conditions were then applied to a wide variety of N-nucleophiles using 1 as the coupling partner (Fig. 3). The N-alkylation of azoles is still a recognized challenge in synthetic chemistry, so we were pleased to see that many systems were compatible with our process. This included differentially substituted indazoles (811) and indoles (1215), which could incorporate handles for further cross-coupling, such as chloride, bromide and ester functionality. Pleasingly, we succeeded in alkylating a protected tryptophan residue (16) and also accessed 17, which is a synthetic intermediate for the preparation of the antineoplastic enzastaurin39. Carbazole (18) and pyrrole (19) could be used, as well as a functionalized 7-deazapurine (20), which is a common scaffold in many blockbuster drugs like pevonedistat (anticancer).

Fig. 3: Scope of the N-nucleophilic partner for the amination of iodide 1.
figure 3

Notes: areaction performed using CuI as the [Cu(i)] catalyst; breaction performed using CuCl as the [Cu(i)] catalyst; creaction performed at 0 °C; dreaction performed using DMF–CH3CN (9:1) as the solvent. Boc, t-butyloxycarbonyl.

Aminopyridines are motifs frequently encountered in drug-development campaigns and could also be alkylated in high yields. Electronic (2126) and steric (27) perturbation of the system did not hamper reactivity, and we also succeeded in using the less nucleophilic N-phenyl derivative (28). Other systems that underwent efficient coupling with 1 were 2-aminoquinoline (29), several 2-amino-pyrimidines (3032), 2-amino-pyrazine (33), as well as 2-aminopyrrolo[2,1-f][1,2,4]triazine (34), which is found in the structure of many commercial drugs, including remdesivir, an antiviral considered for the treatment of COVID-19 infections40.

We then considered the possibility of using this chemistry to convert alkyl iodides into primary amines, something challenging with ammonia owing to known over-alkylation issues. Pleasingly, we could engage commercially available benzophenoneimine41,42 as an effective surrogate providing 35, which, upon simple deprotection, gave primary amine 36.

The use of carbamates/amides in this coupling process proved difficult (see below), but we nonetheless demonstrate efficient alkylation of a cyclic carbamate (37), as well as a β-lactam that gave 38 in near quantitative yield.

The Supplementary Discussion contains information regarding additional control experiments run with each class of nucleophiles to rule out background SN2 reactivity (Supplementary Tables 2, 5, 6 and 7). In all cases, no product formation was detected when the reactions were run in the absence of copper catalyst and oxidant.

Our scope evaluation demonstrated wide compatibility with many classes of N-reagents, notoriously difficult in classical SN2 settings. In terms of limitations, we did not succeed in extending this chemistry to less nucleophilic benzamide (for example, 39) and aniline (40). UV–vis absorption spectroscopy studies were therefore conducted to understand and identify the recalcitrant step in the copper catalytic cycle that was thwarting reactivity. In general, coordination of the N-nucleophile to Cu(i) and/or the oxidation of the resulting species are currently believed to be the limiting steps, potentially resulting in unproductive pathways for the alkyl iodide, such as dehalogenation or elimination (Supplementary Figs. 2226). This lack of reactivity has, however, provided a substantial opportunity for the chemoselective alkylation of complex materials (see below) that would have been very challenging using ionic approaches.

The alkyl iodide scope was evaluated using 2 as the nucleophile, and our conditions proved general for a broad array of substrates (Fig. 4a). Both cyclic and acyclic systems were successfully engaged, as demonstrated by the formation of 41–45, which also contain HAT-activated benzylic and α-O positions. Several heterocyclic building blocks were evaluated and this included protected 3- and 4-iodo-piperidines (46 and 47), which increased the number of functionalities tolerated. Notably, the chemoselective activation of alkyl versus aryl iodides is demonstrated in 47, which would be difficult by other strategies based on either SET or metal-mediated oxidative addition. This method also enabled coupling of 2 with 4-iodo(thio)pyranes (48 and 49), 2-iodo-N-Boc-azetidine (50) and 2-iodo-oxetane (51). Spirocyclic fragments43 are now popular in medicinal chemistry campaigns to increase the sp3 content in organic leads44, and our methodology successfully led to the formation of 52 and 53 in good yield, while 3-substitued cyclobutyl iodides gave 54 and 55.

Fig. 4: Scope of the secondary alkyl iodide partner for the amination with N-nucleophile 2.
figure 4

Notes: areaction performed using CuCl as the [Cu(i)] catalyst; breaction performed using CuI as the [Cu(i)] catalyst; creaction performed at 0 °C; dreaction performed using CuI (1 mol%) as the [Cu(i)] catalyst; ereaction performed using CF3–C6H5:CH3CN (9:1) as the solvent. Boc, t-butyloxycarbonyl; d.r., diastereomeric ratio.

The majority of alkyl iodides used in the scope are commercial building blocks. However, a powerful application was found by the preparation of nitrogenated scaffolds exploiting secondary alcohols via the Appel reaction and several olefins after iodo-functionalizations. For example, hydroxyl group-containing alkaloid nortropine and 3α-cholestane were used to obtain indazole products 56 and 57 as single diastereomers. Furthermore, iodo-etherification and -fluorination of cyclohexene enabled formation of valuable vicinal ether and F derivatives 58 and 59, while iodolactonization then amination of norbornene carboxylic acid gave 60 in good yield. In all cases, the diasteroselectivity of the initial iodo-functionalization was inconsequential, as the substrates underwent stereoconvergent amination at the less hindered side. Hence, olefin iodo-functionalization represents a powerful gateway to quickly enlarge the pool of substrates available to this aminative coupling that cannot be accessed using, for example, radical strategies based on activated carboxylic acids.

Figure 5 depicts several examples of how this reaction can be applied at a late stage for the N-alkylation of many complex bioactive materials. We succeeded in the selective and high-yielding alkylation of the indole ring in the sleep hormone melatonin in the presence of a tethered N-acetamide group (61). The oxazolidinone ring in metaxalone (62, a widely used muscle relaxant) and the antitussive fenspiride (63) were alkylated in high yield. The successful formation of 63 also demonstrates compatibility with tertiary amine functionalities, which are often problematic in photoredox catalysis. The migraine treatment medicine zolmitriptan is an interesting example because of the presence of both free indole and oxazolidinone. Our reaction conditions enabled a complete discrimination between these two nucleophilic sites, resulting in the chemoselective alkylation of the azole framework (64).

Fig. 5: Late-stage N-alkylations of complex and biologically active materials.
figure 5

Notes: areaction performed using CuCl as the [Cu(i)] catalyst; breaction performed using CuI as the [Cu(i)] catalyst; creaction performed using DMF:t-BuOH (9:1) as the solvent; dreaction performed using DMF:CH3CN (9:1) as the solvent. Boc, t-butyloxycarbonyl.

We then applied the method to the alkylation of complex 2-aminopyridine- and 2-amino-pyridimidine-based drugs imiquimod and trimethoprim, which gave 65 and 66 in good to excellent yield. In the latter case, double alkylation of both nucleophilic NH2 groups was possible by increasing the equivalents of 4-iodopirane. Another example of chemoselective N-alkylation is provided by the formation of 67 from the antiretroviral lamivudine. The success of this example is remarkable, as reactivity was exclusive at the 4-aminopyridinone core in the presence of a primary alcohol, two activated positions for HAT and a thioether. Finally, we obtained preliminary results demonstrating applicability of the coupling process in the alkylation of tryptophan residues in small peptides (68).

Conclusions

In summary, the integration of α-aminoalkyl radical-mediated XAT with copper catalysis has led to the development of an efficient strategy for the coupling of secondary alkyl iodides with N-nucleophiles. The utilization of this strategy eliminates the requirement for strong reductants in the alkyl radical generation step. This reactivity occurs at room temperature under just 1 h and enables the preparation of many complex building blocks that are elusive through SN2 reactivity.

Methods

General procedure for the amination of alkyl iodides

An oven-dry tube equipped with a stirring bar was charged with the alkyl iodide (0.20 mmol, 1.0 equiv.), the N-nucleophile (0.30 mmol, 1.5 equiv.) and [Cu(MeCN)4]PF6 (7.5 mg, 0.020 mmol, 10 mol%). The tube was capped with a Supelco aluminium crimp seal with septum (PTFE/butyl) and evacuated and refilled with N2 (three times). Dry and degassed CH3CN (1.0 ml), t-BuOH (1.0 ml), (n-Bu)3N (238 μl, 1.0 mmol, 5.0 equiv.), BTMG (80 μl, 0.40 mmol, 2.0 equiv.) were sequentially added. The resulting solution was treated with cumOOTMS (224 mg, 238 μl, 1.00 mmol, 5.0 equiv.) dropwise under vigorous stirring. After 1 h the tube was opened and the mixture diluted with brine (2 ml) and EtOAc (2 ml). The organic layer was separated and the aqueous layer was extracted with EtOAc (5 ml × 2). The combined organic layers were dried (MgSO4), filtered and evaporated. The crude material was purified by flash column chromatography on silica gel.

Data availability

The data supporting the findings of this study are available within the paper and its Supplementary Information or from the authors upon reasonable request.

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Acknowledgements

D.L. thanks EPSRC for a fellowship (EP/P004997/1) and a research grant (EP/T016019/1) and the European Research Council for a research grant (758427). We thank W. Ashworth, P. Gillespie and S. Wells for performing safety studies. We thank M. Johansson (AstraZeneca) for useful discussions.

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F.J. and D.L. designed the project and directed the work. B.G. and A.-L.B. performed all the synthetic and mechanistic experiments. J.J.D performed the scale-up experiments. All authors analysed the results and wrote the manuscript.

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Correspondence to Fabio Juliá or Daniele Leonori.

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Peer review information Nature Catalysis thanks Michael Doyle and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.

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Supplementary methods, discussion, Tables 1–8, Figs. 1–30 and references.

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Górski, B., Barthelemy, AL., Douglas, J.J. et al. Copper-catalysed amination of alkyl iodides enabled by halogen-atom transfer. Nat Catal 4, 623–630 (2021). https://doi.org/10.1038/s41929-021-00652-8

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