Reversible intracellular acidification and depletion of NTPs provide a potential physiological origin for centuries of dormancy in an Antarctic freshwater copepod

A great diversity of crustacean zooplankton found in inland and coastal waters produce embryos that settle into bottom sediments to form an egg bank. Embryos from these banks can remain dormant for centuries, creating a reservoir of genetic diversity. A large body of literature describes the ecological and evolutionary importance of zooplankton egg banks. However, literature on the physiological traits behind dormancy in crustacean zooplankton are limited. Most data on the physiology of dormancy comes from research on one species of anostracan, the brine shrimp, Artemia franciscana. Anoxia-induced dormancy in this species is facilitated by a profound and reversible acidification of the intracellular space. This acidification is accompanied by a reversible depletion of adenosine triphosphate (ATP). The present study demonstrates that acidification of the intracellular space also occurs in concert with a depletion of nucleoside triphosphates (NTPs) in the Antarctic copepod, Boeckella poppei. Like A. franciscana, the depletion of NTPs and acidification are rapidly reversed during aerobic recovery in B. poppei. These data provide the first comparative evidence that extreme dormancy under anoxia in crustacean zooplankton is associated with intracellular acidification and an ability to recover from the depletion of ATP.

phosphates of NTPs, and the two phosphates of nucleoside diphosphates (NDPs) were detected in Early Development (ED) embryos of B. poppei with 31 P-NMR (Fig. 1A).At least three unidentified phosphagen peaks were also detected (Fig. 1A).Average embryonic intracellular pH was estimated using the chemical shift of inorganic phosphate (P i ) from 12 h spectra and a standard curve relating the P i chemical shift to solution pH at 277 K (3.85 °C) (Fig. 1B).Values over pH 8 were evaluated qualitatively, because small changes in ppm translate into large pH shifts in this region of the standard curve (Fig. 1B).A comparison of 6 h, 12 h, and 24 h 31 P-NMR spectra demonstrated that 12 h spectral summations provide the shortest data acquisition time with resolution high enough to identify the chemical shifts of P i and the β-phosphate of NTPs (Fig. 2).
The intracellular pH of a population of B. poppei embryos was heterogenous during the first 14 h after separation of bulk sediment.Based on the width of the P i peak in 31 P-NMR spectra, it was inferred that the pH of compartments containing P i ranged from 6.5 to > 8.0 during the 12-h NMR data acquisition (Fig. 3).The chemical shift of the main P i peak during the first 14 h after isolation of embryos from lake sediment indicated a dominant intracellular pH range of 7.4 to > 8.0 (Fig. 3).During the period of 38-50 h of aerobic incubation, a dominant P i peak developed at a chemical shift expected for a solution pH of 7.8 (n = 1) (Fig. 3).
Intracellular pH acidified to 7.17 ± 0.06 (n = 3) after 13 weeks of anoxia, as demonstrated by an upfield (right) shift in the main inorganic phosphate peak (Fig. 3).During the first 14 h of aerobic recovery from anoxia, the main P i peak shifted dramatically downfield (to the left) and merged with the phosphomonoester peak.This shift in the main P i peak indicated that the dominant intracellular pH was > 8 (n = 3) in the majority of embryos during the first 14 h of aerobic recovery from anoxia (Fig. 3).The lower end of the pH range also increased from 6.55 ± 0.08 to 6.83 ± 0.02 (n = 3), as indicated by the downfield (left) shift of valley to the left of the P i peak (Fig. 3).A definitive P i peak was partially resolved from the phosphomonoester peak 60-72 h after the return of aerobic conditions, and this peak indicated a dominant intracellular pH of 7.95 ± 0.32 (n = 2) (Fig. 3).Statistical analysis of pH differences between treatments was not conducted for two reasons: (1) the P i and PME chemical shifts are not resolved under aerobic conditions and (2) the accuracy of pH determination by 31 P-NMR decreases substantially when greater than pH 8.0.
31 P-NMR spectra demonstrated that NTP concentration is dependent on oxygen availability (Fig. 3).A broad peak corresponding to γ-NTP and β-NDP was identified between − 4.5 and − 6.6 ppm.This γ-NTP and β-NDP peak narrowed under anoxia and broadened during aerobic recovery from anoxia (Fig. 3), but analysis by integration detected no significant change in total area under the curve for this peak (Fig. 4).A cluster of peaks corresponding to α-NTP and α-NDP was present between − 9.0 and − 11.2 ppm in aerobic spectra.The α-NTP and α-NDP peaks decreased in amplitude under anoxic conditions, but with no discernible change in spectral range (width) (Fig. 3).These qualitative changes to the α-NTP and α-NDP peaks reversed during aerobic recovery (Fig. 3), but analysis by integration detected no statistically significant change in total area under the curve (Fig. 4).A β-NTP peak was identified between − 18.1 and − 19.7 ppm during aerobic incubations (Fig. 3).This β-NTP peak decreased significantly under anoxia (p = 0.0370; n = 3) and increased in during aerobic recovery (p = 0.0087; n = 3) (Figs. 3 and 4).The β-NTP peak area was the same during aerobic incubation before and after exposure to anoxia (p = 0.3799; n = 3) (Fig. 4).
Multiple peaks corresponding to phosphomonoesters were present between 3.1 and 5.0 ppm in 31 P-NMR spectra of B. poppei embryos (Figs. 1 and 3).A single large PME peak developed at 3.5-4.0ppm under prolonged anoxia (Fig. 3), but the area under the PME peak did not increase significantly under anoxic conditions (p = 0.0517; n = 3) (Fig. 4).The area under the PME peaks did, however, decrease significantly during aerobic recovery (p = 0.0131; n = 3) (Fig. 4), and the dominant chemical shift for PMEs moved downfield (left) by 0.4 ppm (Fig. 3).Three unidentified phosphagens were present in aerobic spectra acquired within 50 h of separating embryos from stored lake sediment (Fig. 1).A single small peak produced by unidentified phosphagen #1 was present in all spectra between 0.8 and 1.2 ppm (Figs.1-3).This peak is in the chemical shift range for P i , but did not change under any condition tested.If this phosphagen were inorganic phosphate, it would indicate a stable compartment with a pH of approximately 6.0.Two additional unidentified phosphagens were detected and well resolved in all collected spectra (Figs. 1 and 3).Unidentified phosphagen #2 produced a large peak between 0 and 0.8 ppm (Figs. 1 and 3) that did not change under anoxia (Figs. 3 and 4).Unidentified phosphagen #3 was observed as a strong peak between − 2.5 and − 3.5 ppm (Figs. 1 and 3) in aerobic spectra acquired between 2 and 14 h after isolation of embryos from lake sediment (Fig. 3).This third unidentified phosphagen decreased significantly under anoxia (p = 0.0168) (Figs. 3 and 4).It was present in some spectra during aerobic recovery, but no significant increase in peak volume was detected during aerobic recovery (p = 0.1647) (Figs. 3 and 4).Unidentified phosphagen #3 was not present in spectra acquired at 60-72 h of aerobic recovery (Fig. 3).
The phosphagen profile in 31 P-NMR spectra differed between embryos that were left for 48 h in NMR tubes without solution changes (Fig. 5A) and embryos that were in tubes with frequent solution changes (Fig. 5B).Without frequent solution replacement, mean intracellular pH decreased to 7.06 (Fig. 5A).By contrast, intracellular pH within the population of embryos converged on an alkaline pH of 7.75 when solution changes were performed between aerobic spectra (Fig. 5B).The PME peak also increased dramatically and shifted downfield (left) in the absence of solution changes.These changes in PME and P i resonance peaks are similar to those observed under anoxia.However, unlike anoxia, the β-NTP peak is always visible.

Assessment of embryo viability after 31 P-NMR.
No empty embryonic exoskeletons or nauplii were observed when B. poppei were removed from the NMR tubes on the last day of NMR spectra acquisition.Less than 0.002% of embryos were white (dead) when removed from the NMR tubes; 99.998% were orange/red in  After 2 weeks of exposure to light and oxygen in artificial freshwater, 63.5 ± 4.7% of B. poppei removed from the NMR tubes remained in the ED stage, and < 0.2% hatched as swimming nauplii.By 28 d of aerobic incubation after removal from the NMR tubes, 37.9 ± 1.4% of ED embryos used in hatching viability tests remained in the ED stage.Another 11.7 ± 1.7% had progressed to the ID stage, 27.7 ± 1.2% were in the PN stage, and 11 ± 2.6% successfully hatched.Development and hatching were still in progress when observation was terminated.Over the 28 d hatching study, 10.1 ± 3.6% of embryos turned white (died).Less than 0.2% of embryos died because of premature emergence during the 28 d hatching test.

Discussion
Acidification of intracellular pH facilitates extreme metabolic suppression under anoxia in encysted embryos of the brine shrimp, A. franciscana 12,13 .For over 40 years, studies on the role of intracellular acidification in other zooplankton species were prevented by a lack of biomass needed for in vivo detection of pH with 31 P-NMR.This study is the first to overcome the biomass limitation and demonstrate that intracellular pH transitions also occur in embryos of a copepod.Embryos of the Antarctic freshwater copepod, B. poppei, can remain dormant for almost two centuries 3 .Part of this resilience is due to their ability to enter a dormant state under anoxia 25 .Much like previous research on Artemia, the present study demonstrates that intracellular pH acidifies under anoxia and alkalinizes during aerobic recovery in B. poppei.Nucleoside triphosphate concentrations also decrease under anoxia and increase during aerobic recovery in both species.These novel data on a species divergent from Artemia support the hypothesis that extreme anoxia tolerance in zooplankton embryos requires the ability to reversibly acidify the intracellular environment and the ability to recover from a prolonged depletion of ATP.The measurement of intracellular pH in live embryos of zooplankton is challenging.The cells of diapause embryos in zooplankton are partially syncytial, meaning they have incomplete cell membranes 26,28,30,31 .Premature rupture of the embryonic cuticle causes extrusion of cell contents into the environment, which is lethal in both A. franciscana and B. poppei 22,25 .This sensitivity to rupture prevents the use of microelectrodes.Autofluorescence in the exoskeleton also prevents the use of pH sensitive dyes.Fortunately, in vivo observation of intracellular pH in zooplankton embryos is possible with 31 P-NMR [19][20][21] .Using gram quantities of A. franciscana provides a strong phosphate signal for 31 P-NMR with data acquisition times 15 min 19,20 .By contrast, B. poppei are only available in mg quantities, and a data acquisition time of 12 h is required to resolve inorganic phosphate and NTP peaks (Fig. 2).The 12 h data acquisition time limits temporal resolution of pH shifts, but allows evaluation of intracellular pH and NTP levels during prolonged exposures to anoxia or aerobic conditions.A benefit of using a smaller quantity of embryos for 31 P-NMR is that perfusion of the embryos with aerobic media is not required during the acquisition of NMR data.Replacing the aerobic media between sequential 12 h NMR acquisitions maintains aerobic conditions when 1210 -1407 copepod embryos are used in a single experiment (Fig. 5).
Diapause is a developmentally programmed form of dormancy in zooplankton, and environmental cues are required to "break" out of diapause 16 .Consistent with this, weeks of exposure to light and oxygen in artificial freshwater are required to initiate embryonic development in B. poppei 25 .After 5 d of aerobic incubation plus 13 weeks of anoxic incubation in NMR tubes, 83% of B. poppei remained in the early development stage.Only 0.3% of embryos progressed past the intermediate development stage in the NMR tubes, and no animals progressed past the pre-nauplius stage.These results are consistent with the previous study by Reed et al. 25 , but improved displacement of oxygen for anoxic treatments decreased embryo development in anoxic treatments in the present study.Some development occurs after nitrogen sparging, because residual oxygen is still present 25 .Embryonic development of both A. franciscana and B. poppei stops when metabolic use removes the residual oxygen, and true anoxia is achieved 25 .Two weeks after removal from the NMR tubes, 64% of B. poppei remain arrested in the early development stage, despite the presence of light and oxygen.After 28 d of exposure to light and oxygen, 38% of B. poppei from the NMR tubes remain arrested in the early development stage.Again, these results match those of Reed et al. 25 .Diapause is defined as an arrest of development under conditions that normally promote development.Thus, the observed delay of development under permissive environmental conditions indicates that the majority of B. poppei are in diapause when isolated from lake sediments and placed in NMR tubes.
The majority of embryos of B. poppei are metabolically active shortly after isolation from lake sediments, including those that appear to be in diapause.Intracellular pH is heterogeneous in a population of embryos for the first 14 h after isolation of B. poppei from Antarctic sediments (Figs.2B, 3 and 5).By 38-50 h after isolation from lake sediments, intracellular pH alkalinizes and heterogeneity of intracellular pH in the population decreases (Figs.2B, 3 and 5B).Nucleoside triphosphate levels also increase as pH alkalinizes in diapausing B. poppei (Figs.2B, 3 and 5B).The shift in intracellular pH combined with an increase in NTP concentration indicates that the majority of B. poppei are metabolically active within 50 h of isolation from lake sediment.This signature of metabolic activity is similar to Artemia spp.(Table 1); intracellular pH is alkaline and NTPs are present during early diapause in Artemia monica and A. franciscana 32 ..
The requirement for ATP during diapause in encysted embryos of crustacean zooplankton requires additional investigation.In A. franciscana, ATP levels decrease substantially during diapause while the ATP:ADP ratio decreases during prolonged diapause. 16,33In 31 P-NMR spectra, a decrease in ATP:ADP ratio would appear as a decrease in the β-NTP peak relative to the β-NDP and α-NDP peaks.Contrary to this prediction, all NTP and NDP peaks increase during the first 50 h of development in B. poppei (Figs. 2, 3 and 5).Thus, the increase in NTPs in B. poppei after isolation from lake sediment is inconsistent with descriptions of prolonged diapause in A. franciscana, but may be consistent with A. monica.Embryos placed in NMR tube at T = 0, which is approximately 2 h after isolation of embryos from Antarctic sediments.Shaded grey boxes with identical heights provide reference for inorganic phosphate peak, which is used to infer intracellular pH.Table 1.Comparative evaluation of intracellular pH and NTP levels in diapause zooplankton embryos.NTP, nucleoside triphosphates; **, anoxic to aerobic transition (Aerobic Recovery); nd, no data available; superscript numbers correspond to citations; ‡, Fig. 2; *, Fig. 3; †, Fig. 4. Active metabolism during diapause occurs in diverse species 14,16 .Future studies on B. poppei must determine if diapause involves complete developmental suppression without profound metabolic suppression.Importantly, embryos of B. poppei isolated from a lake near the study lake used for the present investigation were determined in a previous study to be up to two centuries old 2 .Two centuries of dormancy in a copepod embryo would require an almost complete metabolic arrest, like that observed in Artemia spp.The presence of NTPs in diapause embryos of B. poppei under aerobic conditions indicates that metabolic suppression is incomplete (Figs. 2 and  3).Because metabolic processes are still active in diapausing B. poppei after many months of storage in native sediments, a secondary process must be responsible for arresting metabolism.

Artemia franciscana Artemia monica
In contrast with diapause, quiescence is a form of dormancy induced by environmental variables, the best studied of which is anoxia 12,13 .Under anoxia-induced quiescence, metabolism is reversibly downregulated, in large part, by a profound acidification of the intracellular space 12,13 .In A. franciscana, metabolic heat production drops dramatically under anoxia, and ATP levels are not defended 13,18,21 .As ATP levels decrease in this species, adenosine monophosphate, inorganic phosphate, and organic acids increase 13,21 .As observed with 31 P-NMR, intracellular pH in A. franciscana drops by 1 pH unit within the first hour of anoxia 19,20 .A second phase of slower acidification lowers intracellular pH by another 0.5 pH units over the next day 20 .Observations of intracellular pH in B. poppei using 31 P-NMR demonstrate a less severe acidification of 0.5-0.6 pH units after 13 weeks of anoxia (Fig. 3).However, three factors need to be considered in this estimate of a pH shift in B. poppei.First, embryos of B. poppei appear to be in diapause, but experiments with A. franciscana use post-diapause embryos.This discrepancy between the two species is unavoidable, because a rapid method to terminate diapause in B. poppei does not exist.Second, heterogeneity in intracellular pH of B. poppei is high after separation from lake sediments (Fig. 2B).This is not surprising, because heterogeneity in intracellular pH measurement with 31 P-NMR is apparent in post-diapause A. franciscana 20 .The heterogeneity could come from variation in the pH or inorganic phosphate content of embryonic compartments, intracellular compartments, or variation in the rate of recovery from hypoxia encountered in the sediment.Variability is not due to developmental stage, because 100% of the embryos were in the ED stage.It is, however, possible that some embryos were activated and exiting diapause, because 83% were in the ED stage at the end of the experiment.Third, the alkaline P i peak and phosphomonoester peak merged under aerobic conditions, making it difficult to determine the exact pH when intracellular pH is > 7.9.The same problem prevented the exact measurement of pH in diapause embryos of A. franciscana and A. monica 32 .Consequently, measurement of intracellular pH prior to anoxia in B. poppei is an approximation, and the 0.5-0.6 pH unit acidification under anoxia is probably larger in post-diapause embryos.A rapid method to break diapause in B. poppei is needed to test this hypothesis.
Work on divergent species indicates that anoxia-induced quiescence can occur while embryos of crustacean zooplankton are still in diapause.Interestingly, 83.6 ± 2.3% of control embryos remained dormant during the first 4 days of aerobic incubation of encysted B. poppei in culture plates without previous incubation in NMR tubes.The remainder of embryos appear to be in diapause, because it takes weeks of exposure to light and oxygen to break the diapause state in this species 25 .In support of this, > 37% of embryos placed in NMR tubes were still in a state of developmental arrest 28 d after removal from the NMR tubes with incubation under bright light.Thus, it is reasonable to assume that the observed intracellular acidification under anoxia occurred in both diapause and post-diapause embryos in the present study.Acidification under anoxia also occurs in diapause A. franciscana and A. monica, and NTPs decrease in all three species when diapause embryos are exposed to anoxia (Table 1).These biochemical changes are similar in post-diapause embryos of A. franciscana under anoxia 20 .
Importantly, anoxia does not break the diapause state in Artemia spp. 32Nor does it appear to break diapause in the copepod B. poppei.This is indicated by the fact that 83% of B. poppei were still arrested in the ED stage of development after 13 weeks of anoxia and 48 h of aerobic recovery (Supplemental Table 1).The lack of influence by anoxia over developemntal arrest in diapause embryos indicates that diapause and anoxia-induced quiescence are separate processes.It was argued previously that metabolism is regulated independently from development in diapausing Artemia 32,34 .The authors of the present study argue that the metabolic suppression observed in diapause is enhanced by anoxia-induced quiescence.Support for this hypothesis is provided by the intracellular acidification and depletion of celluar NTPs that occurs when embryos that appear to be in diapause are placed under anoxia (Figs. 3 and 4).The same response was also reported in two Artemia species 32 .The profound metabolic arrest that is well documented in quiescent A. franciscana would increase survivorship during diapause, and confer an advantage to the diapausing embryo.The present study is groundbreaking in that it provides the first data to support this hypothesis in a copepod.
Alkalinization of intracellular pH during aerobic recovery is faster and greater than acidification under anoxia.Intracellular pH in Artemia is completely restored within 20 min of exposure to oxygen 20,21 .Similar to Artemia, intracellular pH in B. poppei increased by 0.7-1.1 pH units during aerobic recovery (Fig. 3).Unfortunately, it is not possible to observe pH shifts over minutes in B. poppei, because observation of pH in this species requires a twelve-hour data acquisition time.However, if intracellular pH had recovered slowly during NMR data acquisition, then the P i peak would appear heterogenous (broad).Importantly, the P i peak is not heterogenous during aerobic recovery (Fig. 3).This indicates that the restoration of an alkaline pH in B. poppei is relatively rapid and similar in magnitude to A. franciscana.
The acidification of intracellular pH under anoxia in Artemia is caused by the net hydrolysis of ATP, accumulation of organic acids, and the dissipation of proton gradients 13,21,35 .Levels of NTPs, which would include ATP, decrease under anoxia and are restored during aerobic recovery (Figs. 3 and 4).Future studies should compare the adenylate status of diapause, quiescent, and developing embryos of B. poppei to determine which NTPs decrease during anoxia.Studies with inhibitors of the vacuolar proton ATPase (V-ATPase) and protonophores should also be conducted to determine if proton gradients are dissipated under anoxia in B. poppei, because V-ATPase activity is required to restore intracellular pH during aerobic recovery in A. franciscana 20 . in 12 h increments because twelve hours was the shortest data acquisition time that provided optimal resolution of the inorganic orthophosphate (P i ) and NTP resonance peaks.
Phosphagen identification was accomplished by comparison with published 31 P-NMR spectra [19][20][21]38 . Intacellular pH was estimated from the chemical shift (resonance frequency) of P i based on a titration curve produced using a solution of 10 mmol L −1 P i .The pH of this P i solution was set by the combination of monobasic and dibasic potassium phosphate.
For each 31 P-NMR replicate, a total of 1210 -1407 ED embryos were transferred by pipette to a 5 mm diameter glass NMR tube (Sigma-Aldrich Wilmad®, Vineland, NJ, USA).Prior to transferring the embryos, a plug of glass wool (Pyrex® Fiber Glass Roving, 9989 Glass) was placed in the NMR tube and a single piece of glass filter paper was placed on top of the glass wool.The glass filter paper provided a flat surface for the embryos to settle on at the middle of the NMR detection window.After transferring the embryos, additional sterile AFW was added to ensure that there was 0.8 ml of AFW over the glass filter paper.This fluid volume was enough to ensure that the detection window did not contain air.A standard plastic NMR tube cap was placed on the NMR tube and spectral acquisition initiated immediately.The start of the first NMR acquisition was 2-2.5 h after the embryos were isolated from lake sediment.Thus, the start of the first NMR data acquisition was recorded as hour 2 of aerobic incubation.
NMR spectra were acquired under aerobic and anoxic conditions.In brief, embryos were incubated under aerobic conditions in the NMR tube for 48 h (hours 2-50 of aerobic incubation), and then transitioned to anaerobic conditions for a 13-week incubation in the absence of environmental oxygen.Spectra were then collected under anaerobic conditions.Aerobic exposures resumed after the 13-week anaerobic exposure to evaluate recovery from anoxia.Between spectral acquisitions, the clear glass NMR tube containing embryos was stored under the same lighting and temperature regime used for the hatching viability tests (19:5 light:dark; 4 °C).
For the initial aerobic NMR experiments, AFW overlying the embryos was replaced every 2 h between the 2-14 h and 38-50 h data acquisition periods during the day.Tubes were left for 6 h overnight without solution changes.To transition the embryo to anoxic conditions, approximately 0.7 mL of the aerobic AFW was removed from the NMR tube without disturbing the embryos on the glass filter paper.This solution was replaced with the sterile AFW sparged with 99.999% N 2 to displace oxygen.The NMR tube was then capped with a neoprene gasket secured with Parafilm®, and N 2 gas was passed into the tube through a 21-gauge needle.A 20-gauge needle was inserted into the neoprene cap for gas outflow.The NMR tube with needles inserted was placed into a glass jar for secondary containment.Both the jar and NMR tube were then purged with 99.999% N 2 for 5 min to displace oxygen.The headspace of the NMR tube was purged with N 2 gas for an additional 20 min, and the jar was maintained anoxic by the outflow of N 2 from the NMR tube.Inflow and outflow gas needles were removed from the NMR tube and Parafilm® was secured completely over the top of the cap.The jar containing the NMR tube was purged with N 2 for an additional 5 min to displace room air that entered when the needles were removed from the NMR tubes.A metal lid with neoprene seal on the jar was then closed. 31P-NMR data collection was conducted after eight weeks of anoxia for a single replicate, after which the jar and NMR tubes were again purged with N 2 gas using the same method described previously.Spectra collection by 31 P-NMR was conducted after 13 weeks of anoxia for all replicates.
After the 13-week anoxic test was completed, anoxic AFW was removed from the NMR tube by pipette without disturbing the embryos on the glass filter paper.Sterile AFW equilibrated with room air was then added to the NMR tube.The air-equilibrated AFW was changed five times over 2 h, at which time the first 31 P-NMR spectra were collected to monitor recovery from anoxia (hours 2-14 of aerobic recovery).NMR spectra were also acquired from 36-48 h and 60-72 h after the return of aerobic conditions.Between spectral acquisition under aerobic conditions, AFW exchanges were conducted every 2 h during the day.The tubes were left for 6 h overnight without solutions changes.Attention was taken to ensure minimal disturbance to B. poppei in the tubes during all steps.
Assessment of embryo viability after 31 P-NMR.After 31 P-NMR experiments were completed, embryos from the NMR tube were transferred to a petri dish for visual inspection.Developmental stages were assessed based on the criteria of Reed et al. (2018) and empty cyst casings were noted, if present.A subset of embryos was randomly selected for a viability test.In brief, 20-30 ED embryos were placed in each well of a 12-well plastic culture plate containing 1 ml of AFW per well.This provided a total of 287-315 embryos for each hatching test.Plates with embryos were incubated at 4 °C under a 19:5 light:dark regime for 28 days.Development of embryos and hatching of nauplii were recorded weekly.

Data analysis.
A biological replicate for viability tests was considered to be an individual embryo.However, the data were plotted as a percent calculated from observations of all embryos used in each development and hatching test.A random sample of embryos from an individual subsample of stored lake sediment was considered to be a true replicate of the population present in the source lake, and each NMR experiment was conducted using a separate subsample of lake sediment.An individual replicate for NMR is a single assay conducted on a unique sediment subsample.
Peak integration data for 31 P-NMR were plotted as mean ± standard error of the mean (SEM).One way ANOVA (α = 0.05, JMP 16.0.0(SAS Institute, Cary, NC, USA) was employed to test the effect of oxygen limitation on the relative abundance of phosphate containing compounds in embryos of B. poppei.Brown-Forsythe test was used to test for homogeneity of variance.Tukey-Kramer HSD test was used for multiple comparisons.Intracellular pH values were determined by comparing chemical shift to a generated pH curve and reported as a mean of all replicates.

Figure 2 .
Figure 2. Representative 31 P-NMR spectra of B. poppei in the Early Development stage (ED) summed over (A) 24 h, (B) 12 h or (C) 6 h in artificial freshwater.Predominant chemical shifts for phosphate nuclei are identified above 24 h spectrum.Shaded grey boxes are identical in height to provide a reference for inorganic phosphate (P i ) peak amplitude and chemical shift.The chemical shift of P i was used to infer intracellular pH.

Figure 4 .
Figure 4. Integration of peaks in 31 P-NMR spectra of encysted B. poppei demonstrate changes in NTPs and phosphomonoesters in response to oxygen availability.Area under peak curves is expressed as a percent of the total area under all curves combined for individual spectra.Negative values are an artifact of baseline noise when peaks are extremely small or absent.Shared letters indicate no significant difference among treatment means for one peak.The absence of letters above bars indicates no significant difference among means.Letter designations for individual peaks match Fig. 1 and acronyms for phosphate containing compounds match Fig. 3.

Figure 5 .
Figure 5. Intracellular pH acidifies and NTPs are depleted in the absence of solution changes when embryos are stored in sealed NMR tubes for 36 h (A).Nine solution changes over 24 h between acquisitions of 31 P-NMR spectra maintained intracellular pH and phosphagen profile normally observed under aerobic conditions (B).Embryos placed in NMR tube at T = 0, which is approximately 2 h after isolation of embryos from Antarctic sediments.Shaded grey boxes with identical heights provide reference for inorganic phosphate peak, which is used to infer intracellular pH. https://doi.org/10.1038/s41598-023-40180-y