Enterococcus faecium and Pediococcus acidilactici deteriorate Enterobacteriaceae-induced depression and colitis in mice

Gut dysbiosis is closely associated with the outbreak of inflammatory bowel disease (IBD) and psychiatric disorder. The Enterobacteriaceae population was higher in the feces of patients with inflammatory bowel disease (IBD-F) than in those of healthy control volunteers (HC-F). The Enterococcaceae and Lactobacillaceae populations were higher in the feces of IBD patients with depression (IBD/D+-F) vs. the feces of IBD patients without depression (IBD/D−-F). Therefore, we examined the effects of Klebsiella oxytoca, Escherichia coli, Cronobacter sakazakii, Enterococcus faecium, and Pediococcus acidolactici overpopulated in IBD/D+-F and their byproducts LPS and exopolysaccharide (EPS) on the occurrence of depression and colitis in mice. Oral gavages of Klebsiella oxytoca, Escherichia coli, and Cronobacter sakazakii belonging to Enterobacteriaceae, singly or together, caused dose-dependently colitis and depression-like behaviors in germ-free and specific-pathogen-free mice. Although Enterococcus faecium and Pediococcus acidolactici did not significantly cause colitis and depression-like behaviors, they significantly deteriorated Klebsiella oxytoca- or Escherichia coli-induced colitis, neuroinflammation, and anxiety/depression-like behaviors and increased blood LPS, corticosterone, and IL-6 levels. The EPSs from Enterococcus faecium and Pediococcus acidolactici also worsened Klebsiella oxytoca LPS-induced colitis, neuroinflammation, and depression-like behaviors in mice and increased the translocation of fluorescein isothiocyanate-conjugated LPS into the hippocampus. However, Bifidobacterium longum, which was lower in IBD/D+-F vs. IBD/D−-F, or its EPS suppressed them. In conclusion, Enterococcus faecium and Pediococcus acidolactici, known as a probiotic strain, and their EPSs may be a risk factor for the outbreak of depression and IBD.

of the hypothalamus − pituitary − adrenal (HPA) axis, resulting in the occurrence of colitis and gut dysbiosis accompanied by anxiety, depression, and memory impairment 8,[10][11][12] .Antidepressant drugs attenuate colitis and anti-inflammatory drugs alleviate psychiatric disorders with colitis 13,14 .These findings suggest that the brain can bidirectionally communicate with the gut through the HPA and gut − brain axes.
The gut microbiota of healthy humans and animals consist of bacteria, viruses, fungi, archaea, and multicellular parasites 15 .Of these, commensal opportunistic pathogens, such as Escherichia coli and Klebsiella oxytoca, produce toxic byproducts, including lipopolysaccharide (LPS) 16,17 .Their overgrowth by stressors, such as antibiotics and immobilization stress, dysregulate gut immune homeostasis, resulting in gut inflammation through the excessive expression of proinflammatory cytokines 8,11 .The chronic stimulation of proinflammatory cytokines attenuates the expression of tight-junction proteins in the intestine, resulting in a leaky gut, as observed in patients with IBD 18,19 .The induction of leaky gut by gut inflammation accelerates the absorption of bacterial byproducts, such as LPS, into the blood and alters the gut microbiota composition, which is termed dysbiosis 18,20,21 .Patients with IBD exhibit a reduced gut microbial diversity with the increased Proteobacteria populations compared with healthy individuals [22][23][24] .The fecal microbiota transplantation (FMT) from patients with IBD causes the colitis in transplanted germ-free mice 25,26 .The FMT from mice with colitis also causes anxiety/depression with colitis in transplanted specific-pathogen-free mice 10,11 .The fecal microbiota of patients with inflammatory bowel disease patient feces (IBD-F) have the higher abundance of Enterobacteriaceae population and LPS levels compared to those of healthy control volunteers (HC-F) 25 .Enterococcaceae and Lactobacillaceae populations were higher in the feces of IBD patients with depression (IBD/D + -F) vs. the feces of IBD patients without depression (IBD/D − -F) 25 .The occurrence of colitis and psychiatric disorders triggered by intestinal environmental factors, such as antibiotics and pathogens, can be attenuated by treatment with commensal Lactobacilli and Bifidobacteria 11,27 .These findings suggest that the microbiota can communicate with the brain through the microbiota − gut − brain (MGB) axis, and that the interaction between gut microbiota may control the occurrence of gut inflammation and neuropsychiatric disorders.
Therefore, to understand the role of gut bacteria in the occurrence of IBD and depression, we examined the effects of gut bacteria overpopulated in IBD-F and their byproducts LPS and exopolysaccharide (EPS) on the occurrence of anxiety/depression and colitis in mice.

Results
Gut bacteria overpopulated in patients with IBD/D + or IBD/D − .First, we analysed the live gut bacteria composition of HC-F, IBD/D -F, and IBD/D + -F using Enterobacteriaceae-selective DHL, Lactobacillaceaeselective MRS and Enterococcaceae-selective mEn, and Bifidobacteriaceae-selective BL agar plates (Fig. 1A).Klebsiella sp.(including Klebsiella oxytoca), Escherichia coli and Cronobacter sakazakii populations (in DHL agar plates) and Enterococcus sp.(including Enterococcus faecium) and Pediococcus acidilactici populations (in mEn and MRS agar plates) were highly detected in the IBD-F compared with HC-F.The Enterococcus sp. and Klebseilla sp.populations were the highest in the IBD/D + -F, followed by IBD/D − -F and HC-F, However, the Bifdiobacterium sp.population including Bifidobacterium longum was the highest in the HC-F, followed by the feces of patients with IBD/D − and IBD/D + .To confirm whether Enterobacteriaceae, Enterococcaceae, and Lactobacillaceae were associated with the occurrence of IBD and/or depression, we selected Klebsiella oxytoca and Escherichia coli, belonging to Enterobacteriaceae, Enterococcus faecium belonging to Enterococcaceae, and Pediococcus acidilactici belonging to Lactobacillaceae, which were highly detected in IBD/D + -F, and analyzed their populations in the HC-F and IBD-F by using qPCR (Fig. 1B).Their populations were more highly detected in the IBD-F compared with HC-F, while the Bifidobacterium longum population was lower in the IBD/D + -F vs. HC-F.The population of Enterococcus faecium was higher in the IBD/D + -F vs. IBD/D -F.However, Enterococcus faecium, Pedicoccus acidilactici, and Bifidobacterium longum did not exhibit hemolytic and gelatinolytic activities, like a well-known probiotics, while Enterococcus faecium was resistant to multi-antibiotics including ampicillin and streptomycin and produced biofilm (data not shown).

Effects of IBD/D + -F-abundant Enterobacteriaceae, Enterococcaceae, and Lactobacillaceae on the occurrence of colitis and anxiety/depression in mice.
To understand the interactive effects of IBD/D + -F-abundant gut bacteria on the occurrence of colitis and anxiety/depression, we isolated Klebsiella oxytoca, Escherichia coli, Cronobacter sakazakii, Enterococcus faecium, Pediococcus acidilactici and Bifidobacterium longum and examined their effects on the occurrence of colitis and anxiety/depression in specific-pathogen-free mice (Fig. 2).Of these bacteria, Klebsiella oxytoca exhibited the highest lethal toxicity in specific-pathogen-free mice, followed by Escherichia coli.Oral gavage of Klebsiella oxytoca at doses of 1 × 10 8 and 1 × 10 9 CFU/mouse/ day was lethal in 0% and 50% of mice within 5 days, respectively (Supplementary Figs.S1 and S2).Oral gavage of Effects on the colon length (f) and macroscopic score (g).(h) Effects on the IL-1β, IL-6, LPS, myeloperoxidase (MPO), and corticosterone levels, indicated as compared to control group (CON: 1).Heatmap was generated using Plotly (https:// chart-studio.plotly.com).Klebsiella oxytoca (Ko), Escherichia coli (Ec), Cronobacter sakazakii (Cs), Enterococcus faecium (Ef), Pediococcus acidilactici (Pa), or Bifidobacterium longum (Bl) at a dose of 1 × 10 9 CFU/mouse/day was orally gavaged in mice once a day for 5 days.Control mice (Con) were treated with vehicle (saline) instead of the gut bacterial suspension.Data are shown as box plots (n = 6).*p < 0.05 vs Con.Means with same letters are not significantly different (p < 0.05).All were analyzed using unpaired t test.
Klebsiella oxytoca at doses of ≥ 1 × 10 7 CFU/mouse/day or Escherichia coli at doses of ≥ 1 × 10 8 CFU/mouse/day also caused colitis in mice: they increased the stenosis score, myeloperoxidase activity, IL-1β and IL-6 expression, and the NF-κB + /CD11c + cell population in the colon while the claudin-1 expression was decreased (Fig. 2f-h, Supplementary Figs.S1 and S2).They also increased corticosterone, IL-1β, IL-6, and LPS levels in the blood, as well as LPS level in the feces.However, Cronobacter sakazakii at a dose of 1 × 10 9 CFU/mouse/day weakly, but not significantly, caused colitis in mice.
To understand whether gut microbiota-induced colitis and depression in between germ-free mice and specific-pathogen-free mice were different, we orally gavaged Klebsiella oxytoca into germ-free mice and examined its effects on the occurrence of colitis and depression in specific germ-free mice (Fig. 3, Supplementary Fig. S3).Oral gavage of Klebsiella oxytoca at a dose of 1 × 10 7 CFU/mouse/day caused colitis and anxiety/depression in germ-free mice.Klebsiella oxytoca caused dose-dependently depression-like behavior, increased NF-κB + /Iba1 + and LPS + /Iba1 + cell populations, upregulated IL-1β expression, and decreased the BDNF + /NeuN + cell population in the hippocampus.Klebsiella oxytoca also upregulated IL-1β expression, myeloperoxidase activity, and the NF-κB + /CD11c + cell population in the colon.The incidence of colitis and depression in germ-free mice by Klebsiella oxytoca at a dose of 1 × 10 7 CFU/mouse/day was similar to one treated at a dose of 1 × 10 8 CFU/mouse/ day in specific-pathogen-free mice.
However, oral gavage of Enterococcus faecium, Pediococcus acidilactici, or Bifidobacterium longum at a dose of 1 × 10 9 CFU/mouse/day did not significantly cause colitis and anxiety-/depression-like behaviors in mice.
They also increased LPS level in the feces.
Oral gavage of Enterococcus faecium or Pediococcus acidilactici also increased the occurrence of colitis by Klebsiella oxytoca or Escherichia coli (Fig. 5d-f, Supplementary Figs.S6 and S7).They increased colon shortening, myeloperoxidase activity, stenosis score, IL-1β and IL-6 expression, and NF-κB + /CD11c + cell populations in the colon and LPS level in the feces, while the claudin-1 expression decreased.However, oral gavage of Bifidobacterium longum significantly protected the occurrence of colitis by Klebsiella oxytoca or Escherichia coli.

Effects of EPSs isolated from Enterococcus faecium, Pediococcus acidilactici, and Bifidobacterium longum on the occurrence of colitis and depression by LPS isolated from Klebsiella oxytoca.
To understand the synergistically accelerative component(s) of Enterococcus faecium and Pediococcus acidilactici on the occurrence of anxiety/depression by Enterobacteriaceae anxiety/depression, we isolated EPSs and cytosolic fraction (CF) from Enterococcus faecium, Pediococcus acidilactici, and Bifidobacterium longum and LPS from Klebsiella oxytoca and examined the effects of EPSs and CFs on the occurrence of anxiety/depression in mice by LPS (Fig. 6, Supplementary Fig. S8).Oral gavage of EPSs or CFs did not cause anxiety-/depression-like behaviors and colitis, while that of Klebsiella oxytoca LPS significantly caused anxiety-/depression-like behaviors and colitis (Fig. 6A).The combined oral gavage of Enterococcus faecium EPS or Pediococcus acidilactici EPS with Klebsiella oxytoca LPS increased the occurrence of anxiety/depression than that of Klebsiella oxytoca LPS alone, while their CFs were not affect them (data not shown).Furthermore, EPSs increased LPS-induced NF-κB + / Iba1 + cell population and IL-1β and IL-6 expression and reduced LPS-suppressed BDNF + /NeuN + cell population and claudin-5 expression in the hippocampus.They also synergistically increased LPS levels in the blood and myeloperoxidase activity and IL-1β expression in the colon, while the claudin-1 expression decreased in the colon.However, Bifidobacterium longum EPS significantly suppressed LPS-induced anxiety-/depression-like behaviors, hippocampal NF-κB + /Iba1 + cell population, and blood LPS level and induced LPS-suppressed hippocampal BDNF + /NeuN + cell population and claudin-5 expression.Intraperitoneal injections of EPSs weakly, but not significantly, caused anxiety/depression and neuroinflammation, while that of LPS significantly caused anxiety-/depression-like behaviors and neuroinflammation (Fig. 6B).However, the combined injection of Enterococcus faecium EPS or Pediococcus acidilactici EPS with Klebsiella oxytoca LPS increased the occurrence of anxiety/depression more strongly than that of Klebsiella oxytoca LPS alone.However, Bifidobacterium longum EPS significantly suppressed the occurrence of anxiety/depression.To confirm the accelerative effects of EPSs on the occurrence of anxiety/depression by Klebsiella oxytoca LPS, we orally gavaged fluorescein isothiocyanate (FITC)-conjugated LPS (fLPS) in mice (Fig. 6C, Supplementary Fig. S8).In the hippocampus of fLPS-treated mice, fLPS was detected.Furthermore, the simultaneous treatments of fLPS with EPSs increased fLPS amount and fLPS + /Iba1 + cell population in the hippocampus more than one without EPSs.However, Bifidobacterium longum EPS significantly reduced the fLPS + /Iba1 + cell population in the hippocampus.In the in vitro study, Klebsiella oxytoca and its LPS induced IL-1β and IL-6 expression in macrophages, while treatment with Enterococcus faecium, Pediococcus acidilactici, or Bifidobacterium longum was not affected (Fig. 7).Enterococcus faecium and Pediococcus acidilactici synergistically increased IL-1β and IL-6 expression, while Bifidobacterium longum suppressed it.EPS of Enterococcus faecium or Pediococcus acidilactici singly did not induce IL-1β and IL-6 expression, while the combinations of EPSs with LPS synergistically increased these cytokine expression.However, Bifidobacterium longum EPS suppressed LPS-induced IL-1β and IL-6 expression.

Discussion
Gut inflammation and dysbiosis are closely associated with the occurrence of psychiatric disorders 28,29 .In particular, the high prevalence of commensal gut Protoebacteria including Enterobacteriaceae is closely associated with IBD, including UC and CD, and overexpression of gut bacterial LPS 21,30 .The induction of depression by stressors such as immobilization and antibiotics triggers colitis and increases the gut Proteobacteria population and bacterial LPS production in mice 10,11 .The populations of Alistipes (Bacteroidetes) and Enterobacteriaceae are overpopulated in patients with depression 31 .However, to date, none of these species/strains were convincingly shown to be associated with the occurrence of IBD and depression.
In the present study, we found that IBD-F exhibited a significantly higher abundance of Klebsiella oxytoca, Escherichia coli, and Enterococcus faecium and a lower abundance of Bifidobacterium longum than HC-F.The populations of Enterococcus faecium and Pediococcus acidilactici were higher in IBD/D + -F vs. IBD/D − -F.Among these bacteria, Klebsiella oxytoca caused colitis and anxiety/depression in SPF mice most potently, followed by Escherichia coli and Cronobacter sakazakii.Klebsiella oxytoca yielded the highest level of mortality in SPF mice.Interestingly, these bacteria at a low dose caused anxiety with colitis, while depression with colitis was caused at a high dose.The occurrence of depression and colitis after exposure to Klebsiella oxytoca was more severe in germ-free mice than in specific pathogen-free mice: the occurrence of depression by Klebsiella oxytoca at a dose of 1 × 10 7 CFU/mouse/day in germ-free mice was similar to that detected in specific-pathogen-free mice at a dose of 1 × 10 8 CFU/mouse/day.However, Enterococcus faecium, Pediococcus acidilactici, and Bifidobacterium longum did not significantly cause colitis and anxiety/depression.Högenauer et al. reported that Klebsiella oxytoca may be a causative organism of antibiotic-associated hemorrhagic colitis 32 .Jang et al. reported that antibiotics-induced Klebseilla oxytoca and its lipopolysaccharide caused colitis and anxiety in mice 11 .Jang et al. also reported that IS-induced Escherichia coli and its lipopolysaccharide caused colitis and depression in mice 10 .These results suggest that the occurrence of anxiety/depression with colitis by Enterobacteriaceae, particularly Klebsiella oxytoca, Escherichia coli, or Cronobacter sakazakii, may be dependent on their titers overgrown in the gastrointestinal tract.
The combination of two bacteria among Klebsiella oxytoca, Escherichia coli, and Cronobacter sakazakii additively caused colitis and anxiety/depression.The combination of Escherichia coli, Klebsiella oxytoca, or Cronobacter sakazakii belonging to Enterobacteriaceae with Pediococcus acidilactici or Enterococcus faecium synergistically increased the occurrence of colitis and depression caused by parenteral bacteria of Enterobacteriaceae.However, Pediococcus acidilactici or Enterococcus faecium did not caused colitis and depression.Of these combinations, KoPa, and KoEf most strongly caused depression and colitis, followed by EcEf and EcPa.However, when combined with Bifidobacterium longum, which is also known as a probiotic 33 , it significantly suppressed the occurrence of depression and colitis caused by Klebsiealla oxytoca, or Escherichia coli.Khan et al.  reported that the populations of Bifidobacteria and Lactobacilli were higher in the IBD-F than in the HC-F 34 .Barandouzi et al. reported that the population of Bifidobacteriaceae, but not Bifidobacterium sp., was higher in the gut microbiota of patients with depression than in those of HCs 35 .Cheung et al. reported that patients with depression exhibited a lower abundance of Bifidobacteria and a higher abundance of Proteobacteria including Enterococcaceae compared with those in the HCs 31 .Although some of Pediococcus acidilactici or Enterococcus www.nature.com/scientificreports/faecium are well-known GRAS (generally recognized as safe) probiotics 36,37 , some of them are virulent pathogens, which produce cytolysis 38 .Cambronel et al. and Scardaci, et al. reported that probiotic Enterococcus faecium or Enterococcus faecalis increased catecholamine-dependently biofilm production, resulting in the increased adhesion to the intestinal cells 39,40 .These results suggest that gut bacteria belonging to Enterobacteriaceae together can additively cause colitis and anxiety/depression, Enterococcus faecium (Enterococcaceae) and Pediococcus acidilactici (Lactobacillaceae) can severely elevate the occurrence of colitis and depression by Klebsiella oxytoca or Escherichia coli (Enterobacteriaceae).However, Bifidobacterium longum (Bifidobacteriaceae) may suppress Klebsiella oxytoca-or Escherichia coli-inducible colitis and anxiety/depression.This suggestion is supported by the previous report that oral gavage of ampicillin/amoxicillin increases the populations of gut Enterobacteriaceae belonging to Proteobacteria and Enterococcaceae, which exhibits multi-antibiotic resistance 41 , in mice, resulting in the occurrence of colitis and anxiety.The content of LPS was higher in the IBD-F than in the HC-F.LPS content was weakly, but not significantly, higher in the IBD/D + -F than in the IBD/D − -F.Oral gavage of Klebsiealla oxytoca and Escherichia coli increased the fecal and blood levels and hippocampal NF-κB + /Iba1 + and LPS + /Iba1 + cell populations in mice, while hippocampal and colonic tight-junction protein expression and hippocampal BDNF + /NeuN + cell population decreased.Interestingly, mice highly detected LPS levels in the blood showed depression-like behaviors rather than anxiety-like behaviors.Vogelzangs et al. reported that LPS more sensitively stimulate anxiety than depression.These results suggest that LPS can cause anxiety/depression and anxiety may be processed to depression LPS-dependently 42 .Oral gavage of Enterococcus faecium and Pediococcus acidilactici did not affect blood and fecal LPS levels.However, the combined treatment of Klebsiella oxytoca or Escherichia coli with them increased blood and fecal LPS levels and hippocampal NF-κB + /Iba1 + and LPS + /Iba1 + cell populations.However, the simultaneous treatment of Bifidobacterium longum with Klebsiella oxytoca or Escherichia coli also reduced blood and fecal LPS level and hippocampal NF-κB + /Iba1 + and LPS + /Iba1 + cell populations in the hippocampus compared with those treated with Klebsiella oxytoca or Escherichia coli alone.Jang et al. reported that the overexpression of fecal LPS after exposure to Escherichia coli significantly suppressed the expression of tight-junction proteins in the brain and colon 11 .Kim et al. reported that Escherichia coli treatment increased the NF-κB + /Iba1 + and LPS + /Iba1 + cell populations in the hippocampus and LPS levels in the blood and feces and decreased the BDNF + /NeuN + cell population and tight-junction protein expression 27 .Lee et al. also reported that oral gavage of Escherichia coli and its LPS caused colitis and neuroinflammation in mice 43 .The induction of gut dysbiosis by high-fat diet and ampicillin causes leaky gut in mice 11,44 .IBD patients suffer from leaky gut 45 , a condition that accelerates the translocation of gut bacteria and their by-products such as LPS across the intestinal mucosa into the blood and brain, resulting in neuroinflammation 46,47 .These results suggest that Enterococcus faecium and Pediococcus acidilactici can elevate the occurrence of depression by Enterobacteriaceae such as Klebsiella oxytoca and Escherichia coli through the regulation of gut microbiota LPS-stimulated NF-κB activation and BDNF expression.
Exposure to EPS, not CF, of Enterococcus faecium or Pediococcus acidilactici with Klebsiella oxytoca LPS synergistically increased the occurrence of colitis, neuroinflammation, and anxiety/depression in mice, while Bifidobacterium longum EPS suppressed them.Moreover, these EPSs of Enterococcus faecium and Pediococcus acidilactici elevated the translocation of orally gavaged fLPS into the brain, while Bifidobacterium longum EPS suppressed it.The simultaneous stimulation of their EPSs with Klebsiella oxytoca LPS synergistically increased neuroinflammation and colitis in mice and proinflammatory cytokine expression in macrophages in vitro.The cell wall EPSs of Streptococcus sp.(Enterococcus sp.) and Bifidobacterium sp. have extremely varied structures.EPSs of some Enterococcus sp.cause inflammation in animals structure-dependently 48 , while the EPSs of Bifidobacteirum sp.modulate immune responses including inflammation [49][50][51] .In particular, the EPS of Bifidobacterium bifidum enhances proinflammatory immune response or induces immunosuppressive regulatory T cells 52 .Moreover, some gram-positive and gram-negative exopolysaccharides cause chronic brain inflammation in animals 53 .These results suggest that Enterococcus faecium, Pediococcus acidilactici, and/or their EPSs may elevate the LPS production of gut bacteria such as Klebsiella oxytoca and Escherichia coli, cause colitis, which can increase the translocation of gut bacterial LPS into the brain, resulting in the increased occurrence of anxiety/depression with neuroinflammation.However, the EPS of Bifidobacterium longum may inhibit colitis and neuroinflammation by the regulation of NF-κB activation, leading to the attenuation of anxiety/depression.Nevertheless, the relationship between the structures of EPSs and the occurrence of anxiety/depression and between their structures and biological activities remains unclear.
In conclusion, the interaction between gut microbiota Enterobacteriaceae, Enterococcaceae, Lactobacillaceae, and Bifidobacteriaceae may control the occurrence of IBD, neuroinflammation, and anxiety/depression through the regulation of gut microbiota LPS production and LPS-induced NF-κB activation-mediated BDNF expression.Enterococcus faecium and Pediococcus acidilactici EPSs can elevate the occurrence of anxiety/depression with IBD by Enterobacteriaceae.In particular, the occurrence of depression may be dependent on the gut dysbiosisattributable overproduction of bacterial LPS and EPS.The imbalanced overgrowth of Enterococcus faecium and Pediococcus acidolactici, known as a probiotic strain, and imbalanced overproduction of their EPSs may be a risk factor for the outbreak of anxiety/depression in patients with IBD.

Methods
Volunteers.Volunteers, consisting of HCs (average age, 38.2 ± 2.2 years) and patients with IBD/D + (average age, 46.4 ± 15.3 years) and IBD/D − (average age, 36.0 ± 12.6 years), were recruited from Kyung Hee University (Seoul, Korea) (Supplementary Table S1), as previously reported 25 .All patients with IBD enrolled in the study were > 13 years of age at the diagnosis of IBD, and all diagnoses were confirmed by previously established international criteria based on clinical, endoscopic, histopathological, and radiological findings 54 .The study protocol and informed consent forms for the stool collection were approved by the Committee for the Care and Use of Clinical Study of the Medical School of Kyung Hee University (IRB File No., KHUH 2018-03-006-018 and KHUH 2018-12-004-003).In a patient aged under 18, informed consent was obtained from a parent.All experiments were performed in accordance with relevant named guidelines regulations.We confirmed that informed consent was obtained from all participants before the initiation of the study and that all methods involving human participants were carried out in accordance with the ethical principles of the Declaration of Helsinki and the Korean Good Clinical Practice guidelines.
Mice were kept in wire cages under a ventilated condition (20-22 °C, 50% ± 10% humidity, and 12-h/12-h light/ dark cycle) and fed standard laboratory chow and water ad libitum.Germ-free C57BL/6 J mice (male, 18-21 g, 5 weeks old) were purchased from Clea Japan Inc. (Tokyo, Japan).Germ-free mice were housed in flexible film plastic isolators.All conditions were kept sterile in accordance with The Guidelines for Laboratory Germ-free Animals Care and Usage.Mice were used in the experiments after acclimation for 1 week.All animal experiments were approved by the Institutional Animal Care and Use Committee of Kyung Hee University [IACUC No., KUASP(SE)-18-033, KUASP(SE)-19-290, and KUASP(SE)-20-078] and were performed according to the NIH and University Guide for Laboratory Animals Care and Usage.This study additionally adheres to standards articulated in the ARRIVE guidelines.
Culture of gut bacteria.The fresh feces (0.5 g) of IBD patients and HCs were immediately collected, immediately suspended in 4.5 mL of general anaerobic medium (GAM, Nissui Pharmaceutical Inc., Tokyo, Japan) broth on ice, inoculated onto BL and DHL agar plates (Nissui Pharmaceutical Co. Ltd.), and cultured aerobically (for DHL agar plates) at 37 °C for 1 day or anaerobically (for BL and mEn agar plates) at 37 °C for 3 days 27,43 .The colonies grown in agar plates were inoculated into GAM semi-solid media.These bacteria were identified using Gram staining, 16S rRNA gene sequencing, and API kits, as previously reported 10,21 .For in vitro and in vivo experiments, gut bacteria were anaerobically cultured in the GAM broth at 37 °C (0.8-1.0 at 600 nm) 10,21,42 .Cultured bacteria were collected by centrifugation for 20 min at 5000g, and washed twice with saline.The collected cells (1 × 10 10 CFU/mL) were suspended in saline.

Isolation of LPS and EPS. Pediococcus acidilactici, Enterococcus faecium and Bifidobacterium longum
anaerobically cultured in the GAM broth at 37 °C were collected, washed with distilled water, suspended in distilled water, and sonicated according to the methods of Kim and Kobashi 55 .The sonicated suspension was centrifuged (10,000g, 4 ℃, 30 min).The supernatant faction was freeze-dried and used as cytosolic fraction (CF).EPSs were purified from their precipitates according to the method of Smitinont et al. 56 Klebsiella oxytoca was anaerobically cultured in the GAM broth at 37 °C, and centrifuged for 20 min at 5000 g, and washed twice with saline.The collected cells (1 × 10 10 CFU/mL) were suspended in distilled water.Its LPS was purified using a LPS extraction kit (iNtRON Biotechnolgy, Seongnam, Republic of Korea) 42 .FITC (F7250 Sigma, Aldrich)conjugated LPS (FITC to LPS ratio, 0.2) was prepared as described by Park et al. 57 .
Culture of macrophage cells.Macrophages were isolated from the peritoneal cavity of mice intraperitoneally injected with sodium thioglycolate according to the method of Kim et al. 27 Isolated macrophages were suspended in RPMI 1640 containing 10% fetal bovine serum and 1% antibiotics (RFA), seeded in 6-well plate, incubated at 37 °C for a day, and washed with RFA.The macrophages were treated in the presence or absence of test agents for 20 h.Cytokine levels were assayed using ELISA kits.
To investigate whether the components of gut microbiota such as EPS, LPS, and CF could cause depression and colitis, Klebsiella oxytoca LPS (10 μg/kg/day for i.p. or 20 mg/kg/day for p.o.) in the absence or presence of EPG or CF from Pediococcus acidilactici, Enterococcus faecium, or Bifidobacterium longum (10 μg/kg/day for i.p. or 20 mg/kg/day for p.o.) were orally gavaged or intraperitoneally injected in mice once a day for 5 days (Supplementary Fig. S9c).
FITC-conjugated LPS (20 mg/kg/day) was orally gavaged daily for 2 days from 24 h after EPS or LPS conjugated without FITC was gavaged for 3 days.Anxiety-/depression-like behaviors were measured in the EPM and MB tasks, TST, and FST on the next day after EPS or LPS was treated.Mice were sacrificed 12 h after the final behavioral tasks.Colons and brains were removed and stored at -80 °C for ELISA and immunoblotting.
Behavioral tasks.The EPM task was performed in a plus-maze apparatus (consisting of two open [30 × 7 cm]   and two enclosed [30 × 7 cm] arm with 20-cm-high walls extending from a central platform [7 × 7 cm]), according to the method of Jang et al. 10 MB task was assessed in a smooth, opaque plastic cage (30 × 35 × 13 cm) with a 5 cm layer of sawdust and 30 marbles on top of it (five rows or marbles regularly spaced at 2 cm away from the walls) according to Jang et al. 10 .The number of marbles buried for 30 min was counted.The TST was performed on the edge of a table, at 30 cm above it, for 5 min according to the method of Kim et al. 27 .Mice were judged to be immobile, when they did not move and hung passively.The FST was performed in a round transparent plastic jar (20 × 40 cm 3 ) containing fresh water (25 °C) to a height of 25 cm for 5 min, according to Kim et al. 27 .

Figure 2 .
Figure 2. Effect of gut bacteria on the occurrence of anxiety/depression and colitis in mice.Effects on the time spent in open arms (OT) in the EPMT (a), marble-buried number in MBT (b), immobility time in the TST (c), and forced FST (d), and effects on the BDNF + /NeuN + and NF-κB + /Iba1 + cell population in the hippocampus (e).Effects on the colon length (f) and macroscopic score (g).(h) Effects on the IL-1β, IL-6, LPS, myeloperoxidase (MPO), and corticosterone levels, indicated as compared to control group (CON: 1).Heatmap was generated using Plotly (https:// chart-studio.plotly.com).Klebsiella oxytoca (Ko), Escherichia coli (Ec), Cronobacter sakazakii (Cs), Enterococcus faecium (Ef), Pediococcus acidilactici (Pa), or Bifidobacterium longum (Bl) at a dose of 1 × 10 9 CFU/mouse/day was orally gavaged in mice once a day for 5 days.Control mice (Con) were treated with vehicle (saline) instead of the gut bacterial suspension.Data are shown as box plots (n = 6).*p < 0.05 vs Con.Means with same letters are not significantly different (p < 0.05).All were analyzed using unpaired t test.

Figure 4 .
Figure 4. Combined effects of two bacteria belonging to Enterobacteriaceae on the occurrence of anxiety/ depression and colitis in mice.Effects on the occurrence of anxiety/depression in the EPMT (a) and TST (b).Effects on the BDNF + /NeuN + and NF-κB + /Iba1 + cell population in the hippocampus (c).Effects on the colon length (d) and macroscopic score (e).(f) Effects on the IL-1β, IL-6, LPS, MPO, and corticosterone levels, indicated as compared to control group (CON: 1).Heatmap was generated using Plotly (https:// chartstudio.plotly.com).Among Klebsiella oxytoca (Ko), Escherichia coli (Ec), and Cronobacter sakazakii (Cs), two bacterial (KoEc, 1:1 of KO and Ec; KoCs, 1:1 of Ko and Cs; EcCS, 1:1 of Ec and Cs) combinations at a dose of 1 × 10 8 CFU/mouse/day were orally gavaged once a day for 5 days in mice.Control mice were treated with vehicle (saline) instead of gut bacterial suspension.Data are shown as box plots (n = 6).*p < 0.05 vs Con.All were analyzed using unpaired t test.