Table 2 Details of the relevant information provided in the StoneMod database.

From: StoneMod: a database for kidney stone modulatory proteins with experimental evidence

Type of the information Items displayed Description (with example) Resource of the information
Protein information Common name Full name recommended by the UniProt consortium
(e.g. Uromodulin)
UniProtKB13 (https://www.uniprot.org/)
Alternative name Synonym of the recommended full name
(e.g. Tamm-Horsfall urinary glycoprotein)
UniProtKB13 (https://www.uniprot.org/)
UniProt ID The UniProtKB accession number of a protein that consists of 6 or 10 alphanumerical characters with a hyperlink to the UniProtKB website
(e.g. P07911)
UniProtKB13 (https://www.uniprot.org/)
Isoform A hyperlink to the protein isoform (if any) in the UniProtKB website
(e.g. P07911)
UniProtKB13 (https://www.uniprot.org/)
Protein Atlas The Protein Atlas identifier with a hyperlink to the Human Protein Atlas website
(e.g. P07911)
Human Protein Atlas14 (https://www.proteinatlas.org/)
PeptideAtlas The PeptideAtlas identifier with a hyperlink to the PeptideAtlas website
(e.g. P07911)
PeptideAtlas15 (https://www.peptideatlas.org/)
Gene information Gene name The official full name of the gene
(e.g. uromodulin)
NCBI Gene16 (https://www.ncbi.nlm.nih.gov/gene)
Gene symbol The official symbol of the gene with a hyperlink to the NCBI Gene website
(e.g. UMOD)
NCBI Gene16 (https://www.ncbi.nlm.nih.gov/gene)
Ensembl The Ensembl gene identifier in the Genome annotation database
(e.g. ENSG00000169344)
Ensembl18 (https://www.ensembl.org/)
Modulatory effects Crystallization Modulatory effects on crystallization with references and hyperlinks to PubMed PubMed searching with manual curation
Crystal growth Modulatory effects on crystal growth with references and hyperlinks to PubMed PubMed searching with manual curation
Crystal aggregation Modulatory effects on crystal aggregation with references and hyperlinks to PubMed PubMed searching with manual curation
Crystal adhesion Modulatory effects on crystal adhesion with references and hyperlinks to PubMed PubMed searching with manual curation