Figure 1 | Scientific Reports

Figure 1

From: Using genomics to understand the origin and dispersion of multidrug and extensively drug resistant tuberculosis in Portugal

Figure 1

Genome-wide phylogenetic tree of all 207 clinical isolates, and M. tuberculosis H37Rv. The tree was based on 26 767 SNPs and rooted on Mycobacterium cannettii. The tree is shown annotated with; phenotypic drug susceptibility data for all first-line drugs, SLIDs and FQs (resistance – filled red squares, susceptible – empty squares, not tested – square absence); sub-lineage, SIT and spoligotyping profile; and, presence (filled squares) or absence (empty squares) of specific RDs: RD105, RD174, RD178, RD750 and RDRIO. Tips are colored according to genomic clustering (see legend).

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