Table 1 Sample details including geographic location, age, sequencing statistics and reads mapped using both MetaPhlAn2 and MALT.

From: Oral microbiome diversity in chimpanzees from Gombe National Park

Sample NameSpeciesDetailSiteCountryEstimated Age (approx)Raw Paired ReadsTrimmed, Merged, Q20 ReadsTotal Reads Mapped with MetaPhlAn2Percent MetaPhlAn2Total Reads Mapped with MALT/MEGANPercent MALT/MEGANNormalized Reads from MALT/MEGAN used for AbundanceCitation
AFR_HG_12014Homo SapiensHunter-GatherersDudkaPoland7550BP249,435194,5488460.435%7,8404.030%Not AnalyzedWeyrich et al.9
AFR_HG_12017H. SapiensHunter-GatherersDudkaPoland7550BP136,233117,2063450.294%4,0503.455%Not AnalyzedWeyrich et al.9
AFR_IR_13232H. SapiensIndustrial RevolutionStuttgart-Mühlhausen IGermany1850CE185,781144,5269020.624%9,8676.827%Not AnalyzedWeyrich et al.9
AFR_IR_13234H. SapiensIndustrial RevolutionStuttgart-Mühlhausen IGermany1850CE13,547,24311,546,90719,9240.173%553,9854.798%Not AnalyzedWeyrich et al.9
AFR_JEWB_8812H. SapiensHistoricThe Royal College of Surgeons, EnglandEngland750CE84,74165,1842640.405%3,4815.340%Not AnalyzedWeyrich et al.9
AFR_JEWB_8824H. SapiensHistoricThe Royal College of Surgeons, EnglandEngland750CE101,30985,2792340.274%4,5175.297%Not AnalyzedWeyrich et al.9
AFR_LBK_12824H. SapiensEarly NeolithicStuttgart-Mühlhausen IGermany7440BP53,14544,620960.215%1,8914.238%Not AnalyzedWeyrich et al.9
AFR_LBK_12826H. SapiensEarly NeolithicStuttgart-Mühlhausen IGermany7440BP171,540136,6981860.136%4,0722.979%Not AnalyzedWeyrich et al.9
AFR_LBK_12829H. SapiensEarly NeolithicStuttgart-Mühlhausen IGermany7440BP204,481176,4693580.203%8,9625.079%Not AnalyzedWeyrich et al.9
AFRICAN1H. SapiensNeolithicCape Town vicinitySudan5kBP1,175,5513,66130.082%1,00627.479%Not AnalyzedWeyrich et al.9
AFRICAN2H. SapiensNeolithicCape Town vicinitySudan5kBP12,036,88840,91520.005%1,1452.798%Not AnalyzedWeyrich et al.9
AFRICAN3H. SapiensPre-pastoralistCape Town vicinitySouth Africa1000BP8,495,412822,4516440.078%26,8873.269%Not AnalyzedWeyrich et al.9
AFRICAN5H. SapiensHunter-GatherersCape Town vicinitySouth Africa4–6kBP18,909,9693,024,4397150.024%165,7705.481%Not AnalyzedWeyrich et al.9
AFRICAN6H. SapiensHunter-GatherersCape Town vicinitySouth Africa4–6kBP11,516,626319,0361810.057%7,4542.336%Not AnalyzedWeyrich et al.9
AFRICAN7H. SapiensPre-pastoralistCape Town vicinitySouth Africa1000BP7,715,0482,693,5503,6350.135%95,2193.535%Not AnalyzedWeyrich et al.9
12873_ChimpPan troglodytes verusModernGala ForestSierra Leonne<100BP931,404855,55000.000%855,550100.000%Not AnalyzedWeyrich et al.9
ELSIDRON1H. NeanderthalensisPaleolithicEl Sidron caveSpain49kBP53,186,53451,447,20863,3740.123%1,488,0512.892%104,094Weyrich et al.9
ELSIDRON2H. NeanderthalensisPaleolithicEl Sidron caveSpain49kBP51,079,30148,820,793133,7480.274%1,926,4733.946%104,110Weyrich et al.9
Modern C10H. SapiensModernAdelaideAustraliaModern346,022282,09700.000%282,097100.000%Not AnalyzedWeyrich et al.9
SPYNEW (Spy2)H. Neanderthalensis36k ybpSpy CaveBelgium36kBP6,126,5303,899,9616,9660.179%178,0634.566%104,140Weyrich et al.9
SPYOLD (Spy1)H. Neanderthalensis36k ybpSpy CaveBelgium36kBP18,367,10817,328,35114,5780.084%1,322,7377.633%104,127Weyrich et al.9
C214CalcH. SapiensChalcolithic PeriodCamino del MolinoSpain2340–2920BP8,281,1867,356,36737,7910.514%298,1234.053%104,127Mann et al.22
C53CalcH. SapiensChalcolithic PeriodCamino del MolinoSpain2340–2920BP22,466,04319,509,074118,9300.610%719,2223.687%104,085Mann et al.22
F1948CalcH. SapiensCaribbean Late CeramicAnse a la GourdeGuadeloupe975–1375CE9,297,8928,559,76362,5550.731%571,9776.682%104,104Mann et al.22
F349ACalcH. SapiensCaribbean Late CeramicAnse a la GourdeGuadeloupe975–1375CE11,373,25610,869,46821,2940.196%355,4073.270%104,121Mann et al.22
H10CalcH. SapiensBronze AgeKhövsgölMongolia2.7–3.5kBP13,944,28312,164,33878,1450.642%548,1494.506%104,099Mann et al.22
H24CalcH. SapiensBronze AgeKhövsgölMongolia2.7–3.5kBP11,681,42411,030,62368,7090.623%505,7374.585%104,112Mann et al.22
KT05Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE11,616,92110,921,61030,4320.279%442,3454.050%104,100Mann et al.22
KT08Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE10,485,09310,222,950156,1141.527%989,3229.677%104,116Mann et al.22
KT09Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE10,735,52910,333,83922,0800.214%355,8993.444%104,106Mann et al.22
KT13Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE13,490,43812,973,17952,1680.402%477,8813.684%104,104Mann et al.22
KT14Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE10,091,5189,768,41242,1500.431%381,4783.905%104,115Mann et al.22
KT24Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE14,648,49014,160,65556,6970.400%520,9663.679%104,106Mann et al.22
KT25Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE12,000,82211,720,11746,8170.399%492,3514.201%104,102Mann et al.22
KT26Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE13,119,60912,685,75267,5330.532%628,5504.955%104,113Mann et al.22
KT28Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE12,535,61512,223,39634,1690.280%444,9443.640%104,080Mann et al.22
KT29Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE13,032,73912,674,361103,1690.814%592,3794.674%104,119Mann et al.22
KT31Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE19,085,95518,455,566161,9970.878%1,219,5996.608%104,098Mann et al.22
KT32Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE12,193,75711,844,04290,8950.767%605,3035.111%104,118Mann et al.22
KT36Calc-PEH. SapiensMulti-periodKilteasheenIreland1250CE11,353,73510,963,46870,5030.643%565,6525.159%104,126Mann et al.22
NF217CalcH. SapiensLate PrehistoricNorris FarmsUnited States1300CE5,780,8695,102,96325,9600.509%273,2155.354%104,135Mann et al.22
NF47CalcH. SapiensLate PrehistoricNorris FarmsUnited States1300CE5,972,5095,302,83037,7560.712%250,2314.719%104,080Mann et al.22
S108CalcH. SapiensHistoricMiddenbeemsterNetherlands1850CE6,961,9815,776,74920,0110.346%217,9493.773%104,039Mann et al.22
S40CalcH. SapiensSamdzongSamdzongNepal400–650CE8,646,8477,730,42948,3490.625%471,6856.102%104,103Mann et al.22
S41CalcH. SapiensSamdzongSamdzongNepal400–650CE9,599,6537,672,49570,6180.920%574,7027.490%104,115Mann et al.22
S454CalcH. SapiensHistoricMiddenbeemsterNetherlands1850CE7,453,9596,223,50723,8640.383%334,2355.371%104,118Mann et al.22
02CPan troglodytes schweinfurthiiModernGombeTanzania<100BP10,359,3809,962,78061,9260.622%418,6044.202%104,142Current Publication
04CP. t. schweinfurthiiModernGombeTanzania<100BP2,392,7672,341,27610,5590.451%108,6094.639%104,124Current Publication
05CP. t. schweinfurthiiModernGombeTanzania<100BP4,366,8684,282,54017,0900.399%151,2583.532%104,137Current Publication
07CP. t. schweinfurthiiModernGombeTanzania<100BP11,375,57111,050,15960,4100.547%633,5375.733%104,132Current Publication
13CP. t. schweinfurthiiModernGombeTanzania<100BP22,119,05021,414,173112,1990.524%1,108,5405.177%104,132Current Publication
14CP. t. schweinfurthiiModernGombeTanzania<100BP8,990,7778,632,54145,8340.531%448,0805.191%104,096Current Publication
16CP. t. schweinfurthiiModernGombeTanzania<100BP13,555,40912,633,888106,0020.839%611,2404.838%104,124Current Publication
17CP. t. schweinfurthiiModernGombeTanzania<100BP31,957,59529,909,915228,3830.764%2,383,9107.970%104,107Current Publication
18CP. t. schweinfurthiiModernGombeTanzania<100BP13,803,90113,434,72176,5160.570%666,0584.958%104,114Current Publication
19CP. t. schweinfurthiiModernGombeTanzania<100BP9,842,5989,625,37241,3640.430%440,1334.573%104,090Current Publication
20CP. t. schweinfurthiiModernGombeTanzania<100BP8,038,2637,174,00470,5880.984%408,3875.693%104,110Current Publication
21CP. t. schweinfurthiiModernGombeTanzania<100BP6,327,2446,163,52121,3010.346%270,9174.395%104,113Current Publication
22CP. t. schweinfurthiiModernGombeTanzania<100BP4,816,7364,250,16741,5390.977%238,2355.605%104,081Current Publication
24CP. t. schweinfurthiiModernGombeTanzania<100BP7,196,7386,385,87855,8750.875%396,7946.214%104,143Current Publication
25CP. t. schweinfurthiiModernGombeTanzania<100BP8,853,7638,690,78539,8930.459%408,2074.697%104,119Current Publication
26CP. t. schweinfurthiiModernGombeTanzania<100BP8,915,9098,509,88157,1970.672%410,2904.821%104,133Current Publication
27CP. t. schweinfurthiiModernGombeTanzania<100BP3,700,7883,241,82018,1580.560%156,3724.824%104,105Current Publication
28CP. t. schweinfurthiiModernGombeTanzania<100BP8,348,0637,808,43566,0660.846%373,3634.782%104,105Current Publication
29CP. t. schweinfurthiiModernGombeTanzania<100BP7,012,8836,693,09348,1130.719%545,8578.156%104,105Current Publication