Table 2 Overlap in the number of differentially expressed genes (DEG) between a reference set (mRNATruseq_1 ug) and all the other conditions for the sampling level of 2 × 25 M.

From: Systematic analysis of TruSeq, SMARTer and SMARTer Ultra-Low RNA-seq kits for standard, low and ultra-low quantity samples

Set 1 Set 2 NDEG Set 1 NDEG Set 2 Inter. S1 S2 %
mRNATruseq_1 ug ssmRNATruseq_1 ug 16983 16942 15505 91%
mRNATruseq_1 ug ssTotRNATruseq_1 ug 16983 15181 13457 79%
mRNATruseq_1 ug ssmRNATruseq_100 ng 16983 16305 15070 89%
mRNATruseq_1 ug ssTotRNATruseq_100 ng 16983 16367 14248 84%
mRNATruseq_1 ug RiboG_ssTotSmarter_100 ng 16983 13702 12285 72%
mRNATruseq_1 ug RiboZ_ssTotSmarter_100 ng 16983 10677 10013 59%
mRNATruseq_1 ug RiboZ_ssTotSmarter_10 ng 16983 4562 4419 26%
mRNATruseq_1 ug mRNASmarterUL_XT1 ng_750 pg 16983 9671 9233 54%
mRNATruseq_1 ug mRNASmarterUL_XT1 ng_130 pg 16983 9775 9330 55%
  1. The percentage represents the fraction of DEG relative to the reference set.