A ferroptosis–based panel of prognostic biomarkers for Amyotrophic Lateral Sclerosis

Abstract

Accurate patient stratification into prognostic categories and targeting Amyotrophic Lateral Sclerosis (ALS)-associated pathways may pave the way for promising trials. We evaluated blood-based prognostic indicators using an array of pathological markers. Plasma samples were collected as part of a large, phase III clinical trial (Mitotarget/TRO19622) at months 1, 6, 12 and 18. The ALSFRS-r score was used as a proxy of disease progression to assess the predictive value of candidate biological indicators. First, established clinical predictors were evaluated in all 512 patients. Subsequently, pathologic markers, such as proxies of neuronal integrity (Neurofilament light chain and phosphorylated heavy chain), DNA oxidation (8-oxo-2′-desoxyguanosine), lipid peroxidation (4-hydroxy-2-nonenal, isoprostane), inflammation (interleukin-6) and iron status (ferritin, hepcidin, transferrin) were assessed in a subset of 109 patients that represented the whole cohort. Markers of neuronal integrity, DNA and lipid oxidation, as well as iron status at baseline are accurate predictors of disability at 18-month follow-up. The composite scores of these markers in association with established clinical predictors enable the accurate forecasting of functional decline. The identified four biomarkers are all closely associated with ‘ferroptosis’, a recently discovered form of programmed cell death with promising therapeutic targets. The predictive potential of these pathophysiology-based indicators may offer superior patient stratification for future trials, individualised patient care and resource allocation.

Introduction

Amyotrophic lateral sclerosis (ALS) is a relentlessly progressive neurodegenerative condition with no effective disease-modifying therapy. Late recruitment to pharmacological trials, clinical heterogeneity, and lack of specific monitoring markers are some of the main barriers to successful drug development. Accurate patient stratification into prognostic categories1 and targeting ALS-associated pathways may pave the way for promising phase II trials. Reliance on easily accessible biofluids and the appraisal of markers that are directly implicated in ALS pathogenesis is a key strategy for effective biomarker development. Ferroptosis2 in motor neurons is increasingly recognised as an important process of ALS3 with lipid and iron accumulation being surrogate markers for this type of programmed cell death. Neurofilament light chain (NfL) and phosphorylated heavy chain (pNfH) are well established markers of neural integrity in ALS4,5,6,7,8,9. Oxidised DNA products (oxidation (8-oxo-2′-desoxyguanosine (8-oxo-dG))4,10,11, and lipids (4-hydroxy-2-nonenal; 4-HNE and isoprostane)10,12 have also been shown to be consistently elevated in ALS. Lastly, interleukin-6 (IL-6)13,14 as well as ferritin (FT)4,15,16,17,18,19, hepcidin and transferrin are accepted markers of inflammation and iron metabolism respectively.

The biomarkers were assessed in the Mitotarget/TRO19622 study, a cohort of 512 ALS patients from 15 European centers partaking in a negative, randomized, double-blinded, placebo-controlled phase III trial of olesoxime (NCT:00868166)20. First we analysed the demographic, clinical and biological safety parameters on disease progression (i.e. functional assessment (ALSFRS-r)) for the whole cohort. Then, to enable longitudinal functional assessment we assessed a ferroptosis–based panel of prognostic biomarkers in a subgroup of 109 patients that was randomly selected from the 286 patients who had completed the 18-month-follow up assessment. We focused on baseline parameters, which are convenient to establish patient stratification into prognostic categories. The recently identified candidate predictors1 were modelled to identify a new panel of prognostic indicators and contrast them against clinical predictors typically used as a gold standard.

Results

The baseline clinical characteristics of the two study populations, that culminated in an entire trial cohort of 512 patients and a subset of 109 patients, were comparable (Table e-1). No effect of olesoxime was observed on any of the parameters. Safety parameters were not associated with disease progression in the entire trial cohort of 512 patients or in the subset of 109 patients. Only creatine phosphokinase was associated with ALSFRS-r score at a given time-point, without a prognosis value (Tables e-2 and e-3).

The ALSFRS-r scores showed a mean reduction of 0.70 point per month over the 18-month period. NfL, pNfH, 4-HNE, 8-oxo-dG and FT at baseline were negatively associated with ALSFRS-r at follow-up (Table 1), i.e. higher baseline values indicate a more significant functional disability at 18-month follow-up. Hepcidin, Transferrin, IL-6 and isoprostane were not significantly associated (Table 1). Similar results were found after adjusting for baseline characteristics (main clinical and biological data). In multivariate analyses, baseline NfL, 4-HNE, 8-oxo-dG and FT were independently associated with ALSFRS-r decline (Table 2 with the equation of prediction). From a subset of patients we next assessed these biomarkers in two groups of disease decline. In accordance to a median in the ALSFRS-r score decrease rate from time of inclusion to 18 months, these were referred to as ‘slow’ or ‘fast’ progressors. The ‘fast- progressors’ (n = 55 patients, mean monthly reduction of 0.94 point at ALSFRS-r score) had significantly higher values of NfL, 4-HNE and FT compared to ‘slow-progressors’ (54 patients, mean monthly reduction of 0.33 point at ALSFRS-r score) at baseline. These differences in NfL and 4-HNE progressively decreased with disease progression (Fig. 1). Conversely, the difference of FT became higher with a greater variability as disease progressed. No significant difference was observed with 8-oxo-dG levels.

Table 1 Specific baseline parameters on ALSFRS-r progression.
Table 2 A final model of specific baseline parameters associated with ALSFRS-r progression.
Figure 1
figure1

Progression of the specific biomarkers over 18 months in fast versus slow progressors. The association of specific parameters at baseline with ALSFRS-r progression was analyzed by considering two groups of disease decline; slow and fast. The population was divided according to a median in the ALSFRS-r score decrease rate from time of inclusion to 18 months. The distribution of each parameter (means and SEM) over time was compared between the two groups of slow (54 patients) and fast progressors (n = 55 patients) using Mann-Whitney U tests. *p-value < 0.05.

At 18 months the cohort had a mean reduction per month of 2 points in MMT, 1.5 points in SVC and 0.06 points in BMI. NfL and 4-HNE had a negative association with MMT (p < 0.001 and p = 0.021 respectively) i.e. higher values at baseline indicated lower MMT at follow-up. NfL also negatively correlated with SVC (p = 0.010). Conversely, baseline FT had a positive association with SVC (p = 0.039) and BMI (p = 0.002) at follow-up. No association was identified between disability at follow-up and the inflammatory marker IL-6 at baseline.

Discussion

In comparison to established clinical predictors, this longitudinal study demonstrates the predictive value on disease progression using four easy quantifiable blood biomarkers. Higher NfL, 4-HNE, 8-oxo-dG and FT levels at baseline were associated with greater ALSFRS-r decline over the 18-month follow-up period. Interestingly, the changes of these parameters over time preceded functional decline (i.e. difference between ‘fast’ and ‘slow’ progressors occurred at 6 months, Fig. 1). The persistently elevated values of these markers in the fast-progressor population suggest relentless neuronal degeneration during the 18-month follow-up. Given the possible predictive value of these biomarkers, they may aid patient stratification for future phase trials. From a clinical perspective, they may also contribute to precision care planning, resource allocation and management of individual patients.

The nervous system is particularly rich in lipids and products of lipid peroxidation such as 4-HNE may represent an important and currently under evaluated proxy of disease activity. It is noteworthy that the highly reactive cytotoxic 4-HNE irreversibly cross-links proteins such as neurofilaments21. Changes in FT, an indicator of brain iron status, may represent an additional aetiological factor promoting free radical production. Increased lipid peroxidation and iron accumulation are key components of iron dependent programmed cell death; ferroptosis2.

In conclusion, our findings indicate that markers of ferroptosis in ALS are associated with clinical decline. Elevated NfL and 8-oxo-dG levels on the other hand are secondary to axonal skeleton disintegration and DNA fragmentation, likely a downstream effect of ferroptosis. These observations need to be replicated in larger populations and the predictive value of these markers need to be examined on survival. The characterisation of these mechanisms and the development of ferroptosis-based markers is particularly timely, as iron chelation4 and anti-ferroptotic therapy2,22 are currently under investigation for a range of neurodegenerative conditions including ALS.

Methods

Mitotarget/TRO19622 was a negative, randomized, double-blinded, placebo-controlled phase III trial for olesoxime (NCT:00868166) that included 512 ALS patients from 15 European centers20. All experiments were performed in accordance with French and European guidelines and regulations. Following approval from a local ethics committee at Assistance Publique Hôpital Pitié-Salpêtrière and informed consent from each participant, data were collected every 3 months during the 18-month trial period. Participants were diagnosed with either ‘probable’ or ‘definite’ ALS according to the revised El Escorial criteria, and only patients with symptom duration of more than 6 and less than 36 months were enrolled. In addition to riluzole, patients received olesoxime or placebo.

A subgroup of 109 patients was randomly selected from the 286 patients that completed the 18-month-follow up assessment. This enabled longitudinal functional assessment (ALSFRS-r)23, but precluded survival analyses. All recently identified candidate predictors1 (Table e-1) were included in a prediction model with the exception of frontotemporal dementia (due to a lack of phenotype in this cohort) and the presence of C9orf72 hexanucleotide repeat expansions (data not available).

Finally the population was also divided into two groups of disease decline (i.e. slow and fast), according to a median in the ALSFRS-r score decrease rate from time of inclusion to 18 months.

Plasma samples were obtained at 1, 6, 12 and 18 months after enrolment. Standard ‘Safety parameters’ were monitored during the trial (Table e-2). The ‘Specific parameters’ were measured in duplicate using commercially available kits for NfL (NF-light Kit Advantage, Quanterix, Lexington, MA, USA), pNfH (Neurofilament ELISA, Euroimmun AG, Lübeck, Germany), 8-oxo-dG (ELISA Kit, Abcam, Cambridge, UK: ab201734), 4-HNE (OxiSelect™ HNE Adduct Competitive ELISA Kit, Cell Biolabs, Inc., San Diego, CA, USA: STA-838), 8-isoprostane (ELISA Kit, Abcam, Cambridge, UK: ab175819), interleukin-6 (Human Magnetic Luminex Screening Assay, R&D Systems - Bio-Techne, Lille, France:HUVF4Lrv), ferritin (human ELISA Kit, Abcam, Cambridge, UK: ab108698), transferrin (human ELISA Kit, Abcam, Cambridge, UK: ab108911) and hepcidin (Human Quantikine ELISA Kit, R&D Systems - Bio-Techne, Lille, France: DHP250).

Statistical analyses

The predictive value of the clinical and ‘safety parameters’ on the ALSFRS-r score was investigated using bivariate linear mixed models with randomized coefficients (Table e-2). The fixed effects in the model included time, baseline characteristics and their interaction. All baseline characteristics that associated either alone (p < 0.05) or in interaction with time (p < 0.10) were included in a multivariable linear mixed model (Table e-3).

The predictive value of the ‘specific parameters’ on the ALSFRS-r score was investigated using linear mixed modelling. Random intercept was performed before and after adjustment to the baseline characteristics associated with ALSFRS-r progression and allocated treatment group (Table 1). All parameters associated with ALSFRS-r progression in the adjusted models (interaction with time < 0.10) were included in the multivariable linear mixed model (Table 2).

Finally, the association between specific parameters at baseline and progression of other parameters (e.g MMT, SVC, BMI) were investigated by bivariate linear mixed modelling with random intercept.

All statistical tests were performed at the 2-tailed α level of 0.05. Data were analysed using SAS version 9.4 [SAS Institute Inc., Cary, NC 27513, USA].

Data Availability

All the anonymized data and the statistical analyses will be shared by request from any qualified investigator.

Change history

  • 19 February 2020

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Acknowledgements

The authors wish to acknowledge support from the ARSLA charity (Association pour la Recherche sur la Sclérose Latérale Amyotrophique et autres maladies du motoneurones) and the Fédération de la Recherche Clinique du CHU de Lille, for Dominique Deplanque, Pauline Guyon, Edouard Millois, Valerie Santraine, Marie Pleuvret and Bertrand Accart. The authors also thank Andreas Jeromin for providing the neurofilament assays. We thank Valerie Cuvier for it’s important assistance in the collection of patient samples. The study has been funded by ARLSA charity. ClinicalTrials.gov: NCT:00868166.

Author information

David Devos MD, PhD, Lille University & CHU, France, Author, Design and conceptualized study; analyzed the data and interpretation; drafted the manuscript, study supervision, Caroline Moreau, MD, PhD, Lille University & CHU, France, Author, Conceptualized study; analyzed the data and interpretation; drafted the manuscript, Maeva Kyheng, CHU of Lille, France, Author, statistician, Statistical analyses, Analyzed the results, drafted the Tables, Guillaume Garçon, PhD, Lille University & CHU, France, Author, Acquisition of data: Biological analyses; analysis and interpretation; critical revision, Anne Sophie Rolland, PhD, CHU of Lille, France, Author, Bibliography; analysis and interpretation critical revision, Hélène Blasco, PharmD, Tours University & CHU, France, Author, Acquisition of data: Biological analyse; analysis and interpretation; critical revision, Patrick Gelé, PhD, CHU of Lille, France, Author, Biobanking: storage and quality control; Biological analyse, Timothée Lenglet T, MD, Pitié-Salpêtrière Hospital, Paris, France, Author, Acquisition of clinical data; critical revision, Veyrat-Durebex C, PhD, Tours University & CHU, France, Author, Acquisition of data: Biological analyse; critical revision, Philippe Corcia, MD, PhD, Tours University & CHU, France, Author, Acquisition of data: Biological analyse; critical revision, Mary Dutheil, Lille University & CHU, France, Author, Acquisition of data: Biological analyse; critical revision, Peter Bede MD, PhD, Trinity College Dublin, Ireland, analysis and interpretation; critical revision, Andreas Jeromin PhD11, Quanterix, Lexington, Massachusetts, USA, Author, Acquisition of data: Biological analyse; critical revision, Patrick Oeckl PhD, Ulm University Hospital, Germany, Author, Acquisition of data: Biological analyse; analysis and interpretation critical revision, Markus Otto MD, Ulm University Hospital, Germany, Author, Acquisition of data: Biological analyse; analysis and interpretation critical revision, Vincent Meininger MD, Hôpital des Peupliers, Paris, France, Author, Acquisition of clinical data; critical revision, Véronique Danel-Brunaud, MD. Lille University & CHU, France, Author, Acquisition of clinical data; critical revision, Jean-Christophe Devedjian, PhD, Lille University & CHU, France, Author, Design and conceptualized study; analyzed the data; analysis and interpretation critical revision, James A. Duce, PhD, University of Cambridge, UK, Design and conceptualized study; analyzed the data; analysis and interpretation critical revision, Pierre François Pradat, MD, PhD, Sorbonne Université, Pitié-Salpêtrière Hospital, Paris, France, Author, Design and conceptualized study; analyzed the data analysis and interpretation; critical revision; study supervision and fund raising.

Correspondence to David Devos.

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Competing Interests

The authors have no financial disclosures or potential conflicts of interest in relation to this academic study. The indicated authors take responsibility for data collection and analysis. The principal investigator (DD), who had full access to all the study data, takes full responsibility for submitting the final work for publication. Caroline Moreau has received grants from the France Parkinson charity as well as various honoraria from pharmaceutical companies for consultancy and lectures on Parkinson’s disease. Anne Sophie Rolland, Véronique Danel-Brunaud, Jean-Christophe Devedjian, Mary Dutheil, Charlotte Veyrat-Durebex, Alain Duhamel, Maeva Kyheng, Hélène Blasco, Guillaume Garçon, Patrick Gelé, Timothée Lenglet, Patrick Oeckl, Régis Bordet, Vincent Meininger and James Duce have nothing to declare. Philippe Corcia served on the advisory board and received honoraria from Roche for consultancy and grants from the ARSLA charity. Pierre François Pradat has received grants from the ARSLA charity, the Association Française contre les Myopathies-Téléthon (AFM-Téléthon), the Institut pour la Recherche sur la Moelle épinière et l’Encéphale (IRME), the Thierry Latran Fondation and the Target ALS Fondation. Markus Otto received grants from the EU (Fairpark-II), German Ministry of Science and Technology (KNDD-FTLDc), Thierry Latran foundation, ALS foundation, Foundation of the state Baden-Wuerttemberg and the German science foundation. He has served as advisor for Axon, Biogen and given lectures for Lilly, Fujirebio and Teva. Andreas Jeromin is employed by Quanterix, Lexington, Massachusetts, USA Peter Bede is supported by the Health Research Board (HRB – Ireland; HRB EIA-2017–019), the Irish Institute of Clinical Neuroscience IICN − Novartis Ireland Research Grant, and the Iris O’Brien Foundation Ireland. David Devos has received grants from the French Ministry of Health (PHRC), the French Ministry of Research (ANR), the European Commission (H2020), the ARSLA charity and the France Parkinson charity. He served on advisory boards, as a consultant and given lectures on behalf of pharmaceutical companies such as Orkyn, Boston Scientific, Abbvie and ApoPharma.

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Devos, D., Moreau, C., Kyheng, M. et al. A ferroptosis–based panel of prognostic biomarkers for Amyotrophic Lateral Sclerosis. Sci Rep 9, 2918 (2019). https://doi.org/10.1038/s41598-019-39739-5

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