Table 1 Evaluation of Unified variant pipeline SNP calling versus SNP detection using Sanger sequencing and PhyResSE analysis pipeline.

From: Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

Resistance gene# of SNPs detected by Sanger sequencing# of SNPs detected by UVP# of discordant SNPs between UVP and Sanger sequencing% Concordance between UVP and Sanger sequencing# of SNPs detected by PhyResSE% Concordance between UVP and PhyResSE
rpsL1919010019100
gidB6667198.967100
katG2525010025100
rpoB1920198.920100
embB1617198.917100
pncA1112198.912100