Figure 4 | Scientific Reports

Figure 4

From: Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok

Figure 4

Mitochondrial sequence diversity in Ae. aegypti from Cairns and Bangkok. For Cairns 611,909 and for Bangkok 4,021,144 reads aligned with the Ae. aegypti mitochondrial genome AaegL3. Only nucleotide sites with at least 100 reads in both Cairns and Bangkok data sets were considered. (a) Box plot of the percentage of polymorphic sites (where the minor allele frequency > 0.1) for per site with a read coverage of > 100, using seven mitochondrial genes (ND2, COX1, COX2, COX3, ND4, CYTB, rRNA). (b) The minor allele frequency for nucleotide positions in the mitochondrial genome with a read depth > 100 reads. Only sites with a minor allele frequency of > 0.1 in Cairns and/or Bangkok data sets are shown.