Table 1 Analysis of combined data from BCM and WEHI.

From: Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis

Phylum Base mean Log2 (fold change) Adjusted p-value Max proportion WEHI Max proportion BCM
Verrucomicrobia 39.2 −2.9 2.6 × 10−39 1.1% 5.1%
Actinobacteria 68.7 −1.5 3.5 × 10−06 3.6% 21.3%
Lentisphaerae 9.6 1.6 1.5 × 10−02 1.3% 0.3%
Order
Verrucomicrobiales (V) 38.7 −3.2 4.8 × 10−45 0.3% 5.1%
Enterobacteriales (P) 146.4 −2.0 4.3 × 10−10 8.4% 9.7%
Actinomycetales (A) 0.8 −2.0 2.4 × 10−07 0.03% 0.1%
Victivallales (L) 10.4 2.0 9.6 × 10−06 1.3% 0.3%
Bifidobacteriales (A) 44.1 −1.4 6.8 × 10−03 3.5% 20.9%
  1. Log2 (WEHI/BCM) is based on a fitted mean of the counts in samples as calculated by the DESeq2 package32. The maximum proportions are included for context. The adjusted p-value is from a Wald test with the default BH adjustment. For each order the phylum is indicated in brackets: A Actinobacteria, L Lentisphaerae, P Proteobacteria, V Verrucomicrobia.