Figure 2 | Scientific Reports

Figure 2

From: An exome sequencing based approach for genome-wide association studies in the dog

Figure 2

Relation between linkage disequilibrium, gene annotation, SNP density and distance between tagSNPs on chromosome 1. (a) Whole exome sequencing (WES)- and canine high-density array (cHD)-specific informative SNP count per bin (binsize: 1 Mb) relative to position. (b) Overview of RefSeq Genes track (blue) and Ensembl Gene Predictions track (brown) density relative to position. (c) WES- and cHD-specific linkage disequilibrium (measured in r²) relative to position. (d) Relation between r² and distance between subsequent SNPs. In each graph, lines are obtained with LOWESS (locally weighed scatterplot smoothing).