An organic fluorophore-nanodiamond hybrid sensor for photostable imaging and orthogonal, on-demand biosensing

Organic fluorescent probes are widely used to detect key biomolecules; however, they often lack the photostability required for extended intracellular imaging. Here we report a new hybrid nanomaterial (peroxynanosensor, PNS), consisting of an organic fluorescent probe bound to a nanodiamond, that overcomes this limitation to allow concurrent and extended cell-based imaging of the nanodiamond and ratiometric detection of hydrogen peroxide. Far-red fluorescence of the nanodiamond offers continuous monitoring without photobleaching, while the green fluorescence of the organic fluorescent probe attached to the nanodiamond surface detects hydrogen peroxide on demand. PNS detects basal production of hydrogen peroxide within M1 polarised macrophages and does not affect macrophage growth during prolonged co-incubation. This nanosensor can be used for extended bio-imaging not previously possible with an organic fluorescent probe, and is spectrally compatible with both Hoechst 33342 and MitoTracker Orange stains for hyperspectral imaging.

Biological markers such as hydrogen peroxide (H 2 O 2 ) 1 , glutathione 2 , and metal ions 3 play a central role in cell signalling and cellular development. These species are typically detected by measuring changes in fluorescence upon binding to or reacting with an organic fluorescent probe, e.g. peroxyfluor-1 (PF1, Fig. 1a). PF1 gives a large and measurable increase in green fluorescence on exposure to H 2 O 2 4 . However, rapid photobleaching limits the use of such probes, with a concomitant reduction in fluorescence intensity over time. This is particularly problematic when using a high intensity light source for excitation of the fluorophore in optical fibre-based sensors 5 , and confocal microscopy 6 . This issue can, to some degree, be mitigated by decreasing excitation power or exposure time 7 , however the duration of the experiment and resolution of images collected is significantly limited by this approach. Synthetic derivatives can be prepared, but again any improvement in photostability is generally limited as even relatively photostable organic fluorophores are vulnerable to photobleaching under continuous illumination 8 . A general solution to this problem is needed, and here we present a new hybrid nanosensor approach. This consists of a photostable fluorescent nanomaterial (nanodiamonds, engineered to contain high concentrations of nitrogen-vacancy (NV) centres) for direct imaging and tracking in cells, and a surface-bound organic fluorescent probe for concurrent and orthogonal on-demand biosensing. This enables location of the hybrid sensor without direct optical excitation of the organic fluorophore, as the NV nanodiamond is excited instead. NV nanodiamonds are well suited to this purpose as they do not photobleach even under intense illumination 9 and their fluorescence is mostly unchanged by interactions with biomolecules. This stability has been exploited for biological applications such as single molecule 10 or cell 11 tracking, bioconjugation for drug delivery 12 , study of intraneuronal transport abnormalities 13 , and in vivo tracking of macrophage cells injected with nanodiamonds 14 .
Furthermore, NV nanodiamonds exhibit potential for small molecule sensing 15 and Förster resonance energy transfer (FRET) with organic fluorophores 16,17 . Importantly, NV nanodiamonds also have low toxicity to cells and show good biocompatibility 12,18 .
The new nanosensor reported here consists of carboxy-PF1 molecules 19 bound to the surface of an NV nanodiamond to yield a hybrid sensor (peroxynanosensor, referred to herein as PNS, see Fig. 1), which acts as a trackable, non-toxic, highly photostable nanosensor for H 2 O 2 . The NV nanodiamond is imaged in a cell by excitation at 550 nm and collection of the resultant fluorescence around 700 nm (Fig. 1b). Imaging the NV nanodiamond, rather than the organic carboxy-PF1 fluorophore, allows extended monitoring of PNS within a biological setting without any photobleaching of carboxy-PF1. Thus the surface bound carboxy-PF1 may be separately and orthogonally interrogated on demand (excitation 476 nm, emission 520 nm, Fig. 1c), which allows for long-term sensing of H 2 O 2 that the equivalent organic fluorophore (PF1, Fig. 1a) is not capable of without significant photobleaching. The fluorescence intensity ratio between carboxy-PF1 and NV nanodiamond upon reaction of PNS with H 2 O 2 provides a ratiometric measurement within a biological sample. Furthermore, PNS is spectrally compatible with the commonly used Hoechst 33342 and MitoTracker Orange stains for cell work, allowing for visualisation of cell nuclei and mitochondria concurrent with ratiometric H 2 O 2 sensing.
The sensitivity of PNS to H 2 O 2 in solution was assessed by incubation in 25-100 μM solutions of H 2 O 2 for 45 min, with the resultant fluorescence response proportional to H 2 O 2 concentration as shown in Fig. 2a. NV nanodiamond fluorescence remained essentially unchanged over the concentration range tested. A comparison of the two fluorescence peaks of PNS (520 nm from carboxy-PF1 and 700 nm from the NV nanodiamonds) provides ratiometric detection of H 2 O 2 , which contrasts simple fluorescence intensity-based detection of H 2 O 2 using the equivalent organic fluorophore PF1 in isolation.
The photostability of the NV nanodiamonds was next compared to PF1, and also a second known ratiometric H 2 O 2 sensor, ratioperoxyfluor-1 (RPF1; Fig. 2) 21 . Solutions of NV nanodiamonds (1 mg/mL), PF1 (100 μM) and RPF1 (100 μM) were treated with 10 equivalents of H 2 O 2 for 3 h. Nanodiamond and organic fluorophore solutions were loaded into quartz capillaries that provided a well-defined sample geometry. Samples were illuminated using a wide-field fluorescence microscope at 12 W cm −2 (see Supplementary Fig. S1 and associated text for details) and imaged for 100 s, with the fluorescence intensity plotted as a function of time, see Fig. 2b. Photobleaching of PF1 is evident by a large reduction (>90%) in the fluorescence intensity after 10 s of irradiation. A smaller, but still significant, reduction in fluorescence (>50%) was observed for RPF1 in the first 10 s. Importantly, there was no evidence of photobleaching of the NV nanodiamond fluorescence after 100 s of irradiation, thus validating the use of the NV nanodiamond component to track PNS.
The photostability of PNS in M1 polarised macrophages was compared to free organic fluorophores PF1 and RPF1 in order to investigate its utility in long-term microscopy experiments. Macrophages are associated with a range of diseases and produce high levels of reactive oxygen species, including H 2 O 2 , which is involved in macrophage phenotype regulation 22 . M1 polarised macrophages are typically associated with pro-inflammatory processes, and as such were used to better understand H 2 O 2 signalling within the context of a pro-inflammatory disease state. Macrophages were obtained by harvesting the bone marrow from 12 week old C57BL/6 J mice and the bone marrow cells were differentiated to macrophages over 7 days. The culture media were supplemented with lipopolysaccharide and interferon-γ to polarise cells to the M1 phenotype. The macrophages were polarised for 48 h followed by incubation with one of PNS, PF1 or RPF1 for 30 min. The live cells were imaged in the confocal microscope five times over 30 min in order to measure any photobleaching of PNS, PF1, or RPF1 (Fig. 3a, see Supplementary Fig. S2 for cell images). Both PF1 and RPF1 showed a reduction in fluorescence intensity (25% and 10% respectively) over the course of imaging, while photobleaching was not observed for PNS. Furthermore, monitoring of PNS by the red NV nanodiamond emission does not photobleach the green emission of the surface bound carboxy-PF1 (Fig. 3b). This confirms that PNS may be imaged by the red NV nanodiamond fluorescence in macrophage cells without photobleaching the H 2 O 2 sensing element, while the organic fluorophores PF1 and RPF1 are photobleached by imaging only 5 times in half an hour.
The ability of PNS to sense H 2 O 2 was examined in vitro over an extended period. Macrophages were prepared as before, and after 35 h of polarisation the macrophages were incubated with PNS (10 µg/mL) for 1 h, washed, and imaged by confocal microscopy at 10 min intervals over the final 13.5 h of macrophage polarisation (see Fig. 4a-c for cell images). Surface bound carboxy-PF1 was imaged once by excitation at 476 nm, followed by monitoring of PNS in the macrophages over the 13.5 h experiment (NV nanodiamond excitation 560 nm, emission 680-720 nm). No photobleaching was apparent with the NV nanodiamond fluorescence effectively unchanged over the time course ( Fig. 4d and Supplementary Video 1). At the end of the experiment, surface bound carboxy-PF1 was interrogated once more without evidence of photobleaching. In fact, the overall fluorescence ratio of the carboxy-PF1 compared to the NV nanodiamond (520 nm/700 nm) increased by 18% (p = 0.032), which reflects a basal level of H 2 O 2 production by the macrophages over the last 13.5 h of polarisation (Fig. 4e). Thus it is clear that PNS is viable for long-term confocal microscopy experiments within macrophage cells, as H 2 O 2 sensing is not affected by repeated imaging of the NV nanodiamond component. This allows for extended positional monitoring of PNS without an adverse impact on sensing capabilities.
Our new platform was used to measure H 2 O 2 in macrophages above basal levels. PNS (10 µg/mL) was added to the culture media 17 h after initiation of macrophage polarisation. The cells were incubated with PNS for 1 h and then treated with an exogenous stimulus of 100 μM H 2 O 2 . Macrophage polarisation was completed (17 h) and the cells imaged by confocal microscopy. Cells initially treated with H 2 O 2 showed a 50% higher PNS fluorescence   PNS was added to the culture media on day 2 of the differentiation process to assess any impact on macrophage growth. On day 7, the macrophage cells were polarised to the M1 phenotype as before for a further 2 days and then imaged by confocal microscopy (see Supplementary Fig. S4). Both the green and red fluorescence of PNS is visible within the macrophages after 7 days of co-incubation. Addition of PNS during the differentiation process did not affect macrophage growth, with typical morphology apparent. Hence, PNS is suitable for monitoring H 2 O 2 production during cell proliferation and differentiation.
Finally, the ability of PNS to be multiplexed with Hoechst 33342 nuclear stain and MitoTracker Orange was investigated. Hoechst 33342 and MitoTracker Orange are commonly used stains in biological experiments in order to visualise cell nuclei and mitochondria, respectively. It is desirable for PNS to be available for visualisation and H 2 O 2 sensing without fluorescent signal overlap with these typical cellular stains. In this case, macrophages were incubated with PNS for 30 min and then incubated with MitoTracker Orange and Hoechst 33342 nuclear stain. The cells were fixed and imaged by confocal microscopy (Fig. 5 and Supplementary Video 2), with a clearly identifiable nucleus (indicated by blue Hoechst 33342) and mitochondria (indicated by MitoTracker Orange). Figure 5c demonstrates that PNS is not located within the cell nucleus and the fluorescent signals of surface bound carboxy-PF1 (green) and NV nanodiamond (red) are clearly distinguished from the fluorescent signals of Hoechst 33342 and MitoTracker Orange. Thus, PNS can be successfully multiplexed with other fluorophores for hyperspectral imaging, and cellular detail can be observed concurrent with H 2 O 2 sensing.
In conclusion, attachment of an organic fluorescent probe (carboxy-PF1) to an NV nanodiamond provided a new hybrid nanomaterial (PNS) capable of extended imaging and detection of H 2 O 2 , without photobleaching normally associated with imaging the separate organic fluorophore alone. The NV nanodiamond component can be continuously visualised over an extended period, while the attached carboxy-PF1 is separately interrogated when measurement of H 2 O 2 is desired. PNS detects basal production of H 2 O 2 by M1 polarised macrophages, as well as exogenously introduced H 2 O 2 . This process allows for ratiometric measurement of H 2 O 2 levels by comparison of the NV nanodiamond and carboxy-PF1 fluorescence. Incubation of PNS in macrophages during the final 5 days of differentiation and 2 days of polarisation does not affect cell morphology. In addition, the new sensing platform is spectrally compatible with standard fluorophores Hoechst 33342 and MitoTracker Orange. The high photostability, compatibility with existing fluorescent stains, and ability for on-demand ratiometric detection of H 2 O 2 during extended cell based imaging presents PNS as an excellent new tool for imaging and biosensing.The approach presented here should be generally applicable to other fluorophores.

Methods
All chemicals were purchased from Sigma-Aldrich unless otherwise stated. N-Fmoc-1,4-butanediamine was purchased from ChemImpex (Wood Dale, IL, USA). 100 mM Phosphate buffer solutions were prepared from monosodium phosphate and disodium phosphate in Milli-Q water. Nanodiamond particles were purchased from Nabond, Hong Kong. Ultrasonication of NV nanodiamonds was performed using a FS-600N ultrasonicator homogeniser from Zhengzhou HengChen Electronic (Zhengzhou, HE, China) fitted with a 3 mm probe. All confocal microscopy was performed on a Leica Microsystems TCS SP8X/MP confocal microscope (Wetzlar, Germany). MitoTracker ® Orange CMTMRos and Hoechst 33342 solution (20 mM) was purchased from ThermoFisher Scientific. Fourier Transform Infrared Spectroscopy (FTIR) was performed using a Perkin Elmer S400 Infrared spectrometer in Universal ATR mode. Synthesis of PNS. Nanodiamond particles were irradiated with high-energy electrons (2 MeV) to a total fluence of 1 × 10 18 cm −2 . The particles were annealed in vacuum for 2 h at 800 °C and subsequently oxidised in air at 510 °C for 4.5 h at an air flow rate of 14 mL/min. NV nanodiamonds were suspended in Milli-Q water (10 mL) by ultrasonication for 1 h to a concentration of 1 mg/mL. The nanodiamonds were pelleted by centrifugation at 7800 rpm for 20 min and the supernatant removed. The nanodiamonds were resuspended in a 9:1 mixture of H 2 SO 4 :HNO 3 (10 mL) and stirred at 70 °C for 18 h. The suspension was diluted with water (10 mL), before the carboxylate functionalised nanodiamonds were pelleted (as above) and subsequently resuspended in water (2 × 10 mL). The nanodiamonds were pelleted and resuspended in 0.1 M sodium hydroxide solution (10 mL) and stirred at 90 °C for 1 h. The solution was cooled to rt, the nanodiamonds were pelleted and resuspended in water (2 × 10 mL) then 0.1 M hydrochloric acid (10 mL). This acidic suspension of nanodiamonds was stirred at 90 °C for 1 h and pelleted and resuspended in water (3 × 10 mL) followed by dimethyl formamide (DMF, 2 × 10 mL). The nanodiamond suspension was pelleted and resuspended in a solution of 1-[bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate (HATU, 380.2 mg, 1 mmol) and diisopropylethylamine (348 μL, 2 mmol) in DMF (10 mL), then ultrasonicated for 20 min. N-Fmoc-1,4-butanediamine (173 mg, 0.5 mmol) was added to the suspension and the reaction mixture ultrasonicated for 1 h. The functionalised nanodiamonds were pelleted and resuspended in DMF (2 × 10 mL), then resuspended in a 20% solution of piperidine in DMF (10 mL). This suspension of amino functionalised nanodiamonds was ultrasonicated for 1 h, pelleted and resuspended in DMF (2 × 10 mL). Meanwhile, a solution of carboxy-PF1 (4 mg, 7 µmol), N-hydroxysuccinimide (28 mg, 0.25 mmol) and ethylcarbodiimide hydrochloride (48 mg, 0.25 mmol) in DMF (1 mL) was stirred for 20 min. This solution was added to the nanodiamond suspension, and the resultant mixture was ultrasonicated for 20 min. The functionalised nanodiamonds were pelleted and resuspended in DMF (2 × 10 mL) and water (2 × 10 mL) then lyophilised to give PNS as a white powder.
Attachment of the diamine linker was confirmed by FTIR, with characteristic signals for C-H stretching (2930 cm −1 ) and C-H bending (1453 cm −1 ) modes observed for the amino functionalised NV nanodiamondintermediate. Prior to functionalisation, a broad O-H stretch (~3400 cm −1 ) is observed in the NV nanodiamond FTIR spectrum. The loss of this O-H stretch upon attachment of the butane linker provides further evidence for successful attachment to the NV nanodiamond. The characteristic C-H signals from the butane linker were retained in the FTIR spectrum of PNS, along with an additional stretch at 807 cm −1 . The additional stretch indicates the presence of a boronate ester 23 , as expected due to the two boronate esters in carboxy-PF1 prior to reaction with H 2 O 2 (see Fig. 1a for carboxy-PF1 structure and see Supplementary Fig. S5 for full FTIR spectra).

Photostability of PNS, PF1 and RPF1 in capillary tubes.
Photostability experiments were performed as previously reported 8 . Fluorescence images were obtained using a Olympus IX83 frame, a 40 × (NA 0.95) objective (SP-40X/UPLSAPO-100XO, Olympus, Japan), fitted with a Hamamatsu ORCA-Flash4.0 digital CMOS camera (Hamamatsu Photonics, Japan). A SPECTRA X light engine (Lumencor Inc., USA) was used for excitation and the power calibrated with a PM100D power meter. Glass capillaries (No. 5001-050, VitroCom, USA) were used as received, brought into contact with the PNS, PF1 or RPF1 solution, and the solution was allowed to fill the capillary via capillary forces. Average fluorescence intensities IS and IB inside the capillaries were determined using ImageJ 24 . The fluorescence intensity was averaged for bleaching experiments within an area of ca. 35 μm 2 in the centre of the capillary (in order to minimise the effect of diffusion on the photobleaching dynamics), and it was ensured that diffusion from unilluminated areas of the capillary into the field of view did not affect the measurement by calculating the mean square displacement due to Brownian motion based on particle size.
Macrophage collection and differentiation. Bone marrows were harvested from 12 week old C57BL/6J mice and approximately 1 × 10 6 /mL cells were seeded in 4-well ibiTreat µ-Slide chamber slides (Ibidi; Martinsried, Germany). The bone marrow cells were differentiated to macrophages in RPMI-1640 media, supplemented with 10 ng/mL M-CSF, 10% foetal bovine serum and 1% antibiotic-antimycotic, for 7 days and media was changed every three days. On day 7, the culture media were supplemented with 25 ng/mL lipopolysaccharide from E.coli (LPS) and 5 ng/mL interferon-γ to polarise cells to the M1 phenotype. The macrophages were polarised for 48 h followed by incubations with PNS or organic fluorophore as desired.

Photostability of PNS, PF1 and RPF1 in macrophage cells.
Macrophages were collected and differentiated as above, and then incubated with either PNS (10 µg/mL), PF1 (10 μM) or RPF1 (10 μM) for 1 h. The cells were washed, then imaged at 37 °C and 6% CO 2 by confocal microscopy. PNS was excited at 476 nm and 560 nm; emission was collected from 510-520 nm and 670-732 nm. PF1 was excited at 476 nm and emission collected from 510-520 nm. RPF1 was excited at 405 nm and emission collected from 455-479 nm and 510-524 nm. Each well was imaged at 40x magnification in three different locations across the well and these results averaged. Each location was imaged five times across 30 min. The averaged fluorescence intensity of a treatment over time was then normalised to its initial average fluorescence value. This allowed for comparison between PNS, PF1 and RPF1.
Confocal Imaging PNS in macrophages over 13.5 h. Macrophages were collected and differentiated as above. Samples were incubated with PNS (10 µg/mL) for 1 h, before being washed. The cells were then imaged by confocal microscopy at 37 °C and 6% CO 2 under 63x magnification at three different representative locations. Z-stack images were taken, collecting fluorescence at both 520 nm and 700 nm (excitation 476 and 560 nm respectively). The cells were then imaged continually over 13.5 h, collecting only the red nanodiamond fluorescence at 700 nm (560 nm excitation only). Finally, the cells were imaged again, collecting both 520 nm and 700 nm fluorescence (excitation 476 and 560 nm respectively). The images were processed by ImageJ, removing background autofluorescence to give the fluorescence intensity from three consecutive z slices in the centre of the cell at each location. The ratio of 520 nm/700 nm fluorescence was then calculated from these intensities.
Confocal Imaging response of PNS to macrophages treated with H 2 O 2 . Macrophages were collected and differentiated as above. Two samples were incubated with PNS (10 µg/mL) for 1 h, before being washed. The macrophages were then incubated in media for a further 18 h in either control media, or with added H 2 O 2 (100 μM). The cells were then imaged by confocal microscopy at room temperature under 20x magnification at four different representative locations for each condition. The images were processed by ImageJ, removing background autofluorescence to give the fluorescence intensity from three consecutive z slices in the centre of the cell at each location. The ratio of 520 nm/700 nm fluorescence was then calculated from these intensities.

Stability and toxicity of PNS in macrophages cells.
Macrophages were collected and differentiated as above. On day 2 of the differentiation, PNS (10 µg/mL) was added, incubated for 1 h and then washed. On day 7, the culture media were supplemented with 25 ng/mL lipopolysaccharide from E.coli and 5 ng/mL interferon-γ to polarise cells to the M1 phenotype. After a further 48 h, the cells were imaged by confocal microscopy, a total of 7 days after the addition of PNS. Confocal settings for excitation and emission were as for H 2 O 2 sensing experiments above.