Figure 1 | Scientific Reports

Figure 1

From: UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq

Figure 1

UClncR workflow diagram. The workflow starts from aligned bam (right parameters for stranded/unstranded RNA-seq should be set) for transcript assembly by StringTie. For un-stranded RNA-seq, the workflow only works with lincRNAs. Known lincRNAs are simply quantified and novel lincRNAs are predicted and quantified. For stranded RNA-seq, overlap transcripts in the opposite strand are quantified and predicted.