Figure 2: Scientific Reports

Figure 2

From: FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation

Figure 2

Partial annotation result for the clam transcriptome. (a) Basic statistics for uploaded nucleotide sequences including number of entries (contigs), total base pairs and upload date are listed in the table. (b) Basic information from the uploaded contigs, including GC content, N50, average length, etc., are listed in this table together with a bar chart of the length distribution for contigs. (c) Distribution of GO annotation results for molecular function. The most abundant molecular function in the 3rd level is ion binding, which can be found in approximately 34% of GO annotated contigs. Of note, each contig can have more than one GO term assignment, therefore the total percentage from this bar chart is larger than 1. (d) Transmembrane domain (TM) prediction results show 5,480 contigs have one TM domain and 2,891 contigs have multiple TM domains. FunctionAnnotator also plots the predicted topology of transmembrane domains along with their positional information.