Table 3 Identification of alternative splicing events using rMATS (replicate Multivariate Analysis of Transcript Splicing)27.

From: Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations

AS Events Summary E15 vs E18 E15 vs P0 E15 vs P3 E15 vs P6 E15 vs P9 E18 vs P0 E18 vs P3 E18 vs P6 E18 vs P9 P0 vs P3 P0 vs P6 P0 vs P9 P3 vs P6 P3 vs P9 P6 vs P9
SE 7 52 40 55 55 120 75 123 87 10 9 14 3 5 0
MXE 3 6 18 8 12 6 16 4 10 14 2 3 10 14 0
RI 62 46 25 26 37 73 29 31 34 6 2 9 0 1 2
A5SS 1 9 0 4 0 7 0 2 0 1 1 2 0 0 0
A3SS 3 4 3 3 3 12 5 7 5 1 2 0 1 0 1
Exon Skipping Events
Exon ID Coordinates (mm10) strand Transcript ID Gene Name E15 E18 P0 P3 P6 P9
ENSMUSE00000334942 19:57051130-57051234 ENSMUST00000111559 Ablim1 NA 0.13 0.61 0.729 0.66 0.612
ENSMUSE00000668725 3:148849766-148849804 ENSMUST00000197567 Adgrl2 0.202 0.24 0.61 NA 0.57 0.611
ENSMUSE00001324776 1:82891460-82891507 + ENSMUST00000190052 Agfg1 0.232 0.18 0.41 0.532 0.48 0.489
ENSMUSE00001039657 18:6057517-6057591 ENSMUST00000182066 Arhgap12 0.289 0.32 0.82 NA NA NA
ENSMUSE00000700987 2:10056770-10056806 ENSMUST00000114897 Atp5c1 0.822 0.76 0.55 0.55 0.62 0.574
ENSMUSE00000230008 18:32426224-32426352 + ENSMUST00000091967 Bin1 NA 0.68 0.18 NA NA NA
ENSMUSE00000217920 9:70004306-70004341 + ENSMUST00000034754 Bnip2 NA 0.5 0.9 0.806 NA 0.845
ENSMUSE00000736151 10:127064202-127064453 + ENSMUST00000133115 Cdk4 0.959 0.96 0.8 NA NA NA
ENSMUSE00000691476 5:112251747-112251797 ENSMUST00000112385 Cryba4 0.974 0.98 NA 0.994 0.99 0.99
ENSMUSE00000311733 14:47726471-47726554 + ENSMUST00000022391 Ktn1 NA 0.24 0.5 0.476 NA 0.517
ENSMUSE00000440236 6:93680789-93680877 ENSMUST00000204347 Magi1 0.118 0.09 NA NA 0.48 0.655
ENSMUSE00000667965 7:143518850-143518885 ENSMUST00000072727 Nap1l4 0.477 0.42 0.29 0.228 0.25 0.245
ENSMUSE00001311933 2:105695306-105695456 + ENSMUST00000111082 Pax6 0.995 1 0.94 0.993 1 NA
ENSMUSE00000317905 15:93452117-93452173 + ENSMUST00000068457 Pphln1 0.151 0.07 0.57 0.356 0.5 0.639
ENSMUSE00000635082 9:86790056-86790139 ENSMUST00000074468 Snap91 NA 0.85 0.27 0.248 0.2 NA
ENSMUSE00001196118 11:80393084-80393176 + ENSMUST00000123726 Zfp207 0.368 NA 0.67 NA 0.61 0.593
Intron Retention Events
Exon ID Coordinates (mm10) strand Transcript ID Gene Name E15 E18 P0 P3 P6 P9
ENSMUSE00000784872 3:103174340-103177419 + ENSMUST00000136937 Bcas2 0.039 0.0685 0.026 0.035 0.0225 0.031
ENSMUSE00000787504 11:101295534-101296316 ENSMUST00000139997 Becn1 NA 0.1185 0.0635 0.062 0.051 0.044
ENSMUSE00000643467 2:91013238-91019497 + ENSMUST00000111452 Celf1 0.3755 0.709 0.612 0.8395 0.8565 0.846
ENSMUSE00001342001 1:165338188-165340023 ENSMUST00000193353 Dcaf6 0.082 0.1555 0.0585 0.0635 0.052 0.0535
ENSMUSE00000842895 11:106782469-106784018 ENSMUST00000133426 Ddx5 0.1375 0.1835 0.2265 0.3185 0.302 0.3625
ENSMUSE00000492954 3:95628541-95632102 + ENSMUST00000037983 Ensa 0.458 0.6615 0.4515 0.4335 0.4195 NA
ENSMUSE00001357022 3:152213977-152215630 + ENSMUST00000196062 Fubp1 0.0095 0.0535 0.058 0.0585 0.032 0.0515
ENSMUSE00000857219 1:161038225-161038539 + ENSMUST00000160516 Gas5 0.2265 0.289 0.0485 0.068 0.1195 0.099
ENSMUSE00001326780 7:31134414-31135739 ENSMUST00000188032 Gramd1a 0.4465 0.7265 0.28 0.4175 0.319 0.307
ENSMUSE00000765273 11:50379468-50379964 + ENSMUST00000134230 Hnrnph1 0.093 NA 0.2775 0.1575 0.181 0.165
ENSMUSE00000756514 X:95947770-95950446 ENSMUST00000126605 Las1l 0.0135 0.034 0.0545 0.041 0.043 0.0575
ENSMUSE00000764755 X:94537676-94538065 ENSMUST00000153386 Maged1 0.064 0.1 0.0455 0.0525 0.045 0.0545
ENSMUSE00000777868 5:21743379-21746090 + ENSMUST00000125693 Pmpcb 0.0105 0.026 0.0865 0.033 0.0485 0.0665
ENSMUSE00000740654 X:8143848-8144679 ENSMUST00000141925 Rbm3 0.0675 0.0985 0.0195 0.0405 0.044 0.0695
ENSMUSE00001332031 1:55014483-55016490 ENSMUST00000187500 Sf3b1 0.1365 0.178 0.2265 0.264 0.284 0.282