Field-recorded data on habitat, density, growth and movement of Nephrops norvegicus

The availability of growth data in N. norvegicus is important for management purposes due to a lack of aging criteria and the commercial importance of fisheries in this species. Growth varies as a function of stock density, hence comparisons of growth rates between stocks at known density is particularly valuable. Growth is also related to starting size in males, making raw data on size-specific growth rates more valuable. Internally injected passive tags allowed us to track the growth of male and female individuals over one or two years. The spatial position of tagged recaptures was recorded to measure site fidelity of tagged releases. A total of 3300 pots were fished and their spatial positions were recorded to enable Catch Per Unit Effort calculations. Similarly, spatially geo-referenced v-notching and notched recovery enables spatially gridded densities to be calculated. Finally, acoustic mapping was carried out both on and off the fishing ground and was ground-truthed with sedimentology from grabs at 22 stations. These data are useful for fisheries and macroecological studies.


Background & Summary
Nephrops norvegicus is a small lobster in North-East Atlantic Europe and the Mediterranean where it occupies burrows in muddy substrates 1 . It is commercially important in Europe, being fished in at least 34 Functional Management Units and comprising thousands of tonnes of landings in the United Kingdom, Ireland, and to a lesser extent, in France, Denmark, Iceland and Sweden 2 .
Fisheries management in N. norvegicus is compromised by a lack of reliable aging methods, which in turn affects estimates of growth and recruitment, including how quickly new individuals reach minimum landing size. Indirect methods to estimate growth include length-cohort analysis, which follows size cohorts through time to see how fast a modal size group progresses [3][4][5][6][7] , however this has been hampered by the relatively 'flat' size structure characteristic of many crustacean species 8 . Although proposed aging methods via ring structure analysis of the eyestalk or gastric mill (within the stomach) seemed initially promising, these structures are now thought to be lost on moulting 9 . Hence growth data in this commercially-important group are indirect or absent through most of the range. Neither is tagging straightforward because crustaceans moult and need to be tagged with internal tags. This technology was used in the present study and supplements a limited number of tagging studies in the Skagerrak 3 and the west coast of Scotland 4,10 , with poor returns of tagged individuals having hampered this activity elsewhere 11 .
Much of the habitat requirements and drivers of density in N. norvegicus are derived from fisheries-associated data [12][13][14] , but pot fisheries in inshore areas are less studied and the distribution is more obscure. For example, inshore populations are known to inhabit both shallow and deeper water habitats (such as fjords 15 ) where they may modify their emergence behavior according to ambient light 16,17 . Growth and density are thought to interact in this species due to various density-dependent signals 1,4,13,18 . Mean body size and L max (theoretical size maximum) negatively correlate with density 1 . A mechanism has been shown for reduced body size at high densities in males, which has been linked to suppressed growth of inferior males in high density patches, although www.nature.com/scientificdata/ density-dependent mortality could not be detected in adult N. norvegicus 19 . Data to enable density calculations are provided in the present study.
A tagging programme was carried out in inshore grounds to provide information on the growth of individuals after one year (n = 205) or two years at liberty (n = 36), with approximately equal numbers of recaptured males (n = 108) and females (n = 132) (sex was not recorded for one individual). This enables growth to be compared between the study site in the west of Ireland and other parts of the biogeographic range, or allows data to be filtered according to particular starting sizes (starting size significantly affects growth in males 20 ). Distance travelled between initial release point and final recapture point is given per individual. This provides some information about the site fidelity of lobsters e.g. for stock enhancement purposes. Size distribution of catch (tagged, v-notched and untagged) was recorded on 4742 occasions. These data are not all unique since some individuals will have been recaptured numerous times (as shown by re-capture of v-notched individuals). When v-notched individuals (n = 1093) were recaptured (n = 531), their recapture status was noted to enable density calculation using mark-recapture methods. Spatial information is provided for the pot in which every individual was captured as well as pots with no catch to enable estimation of density indices such as Catch Per Unit Effort to be calculated in raster format. Acoustic bottom type classifications are provided as these may be informative about N. norvegicus catch rates. Acoustic surveys were complemented by sediment grab samples to match acoustically derived sediment classes to standard sediment categories.

Methods
Experimental design. Figure 1 shows a schematic of the experiment. We adopted the following methodology to collect the data of the three datasets 21 : 1. We released 1177 tagged N. norvegicus (males and females) at the fishing ground on 3 dates in 2013. 205 of these individuals were recaptured in 2014 and a further 36 individuals were recaptured in 2015 (see N. norvegicus sampling). 2. The starting size and size at recapture of tagged individuals was recorded, which allowed growth to be calculated. Date at recapture was also recorded to supplement growth data and provide a growth rate over time (i.e. number of days at liberty). 3. V-notching of 1093 untagged individuals was carried out in 2014 to enable population density estimates from mark-recapture methods 22,23 . 4. The spatial position of all 4742 individuals captured (tagged, notched and untagged) in pots was recorded by taking note of the position of the pot they were captured in. 5. The position of all 3300 pots including pots without catch was recorded to enable calculation of Catch Per Unit Effort (CPUE). 6. The size of all individuals in point 4., above, was also recorded with the exception of three individuals for whom size data were lost, giving a total of n = 4739 size data. 7. For tagged individuals, the distance moved between the release and recapture point was calculated per individual. 8. Notes were taken of whether females were 'berried' (bearing embryos), and whether individuals were recently moulted, as indicated by an exceptionally clean or soft shell. 9. To understand how density of N. norvegicus related to habitat variables, 4894 acoustic measurements were taken to provide 5 categories of bottom type (see ' Acoustic data') and these were ground-truthed using sediment size analysis at 22 stations (see 'Sedimentology'). Acoustic mapping took place both in areas on the fishing grounds and outside the fishing grounds. Sediment size sampling was adjacent to the fishing grounds but not over the fished area. This exercise was intended to place acoustic signals into context rather than to directly link sediments to biological data.
N. norvegicus sampling. Sampling was carried out via baited 'pots' (or 'creels'). To prepare for tagging, experimental N. norvegicus were captured in a bay close-by the experimental area and held at an aquaculture facility until they could be tagged with Coded Wire Tags (CWTs -Northwest Marine Technology Inc.). Tagged individuals were released in a 'controlled' manner in 3 batches on separate dates as follows: 5 June, 19 June and 17 July 2013. Release dates were recorded per tagged individual to enable time at liberty and growth per unit time (in days) to be calculated. Coordinates for the three release positions were according to Irish Transverse Mercator projection and translated by a fixed offset (to protect anonymity of fishing grounds), as follows: release point 1 (X 650278, Y 656225), point 2 (X 650241, Y 656226) and point 3 (X 650314, Y 656224). The middle (point 2) of these three positions was used to calculate distance moved between the release site and the site of recapture for every tagged individual. After releasing tagged individuals, the fishing grounds were left 'fallow' (no fishing) until recapture fishing which took place in April to September 2014. Recapture fishing was carried out on 14 dates in 2014 when salted herring was used as bait in a series of 48 pots on a 'string' , each pot being 10 m apart from its neighbour. All individuals captured were scanned and those with a tag were measured (Carapace Length -CL) and retained for return to the laboratory and further analysis. All individuals that did not bear a tag were measured, v-notched on the telson and returned to the seafloor, subject to a minimum size limit of 15 mm CL for v-notching females or 25 mm CL in males (although very few individuals of such small sizes were captured). Presence of a v-notch and size of individual was noted during subsequent fishing. In June and July of 2015 when tagged N. norvegicus had been at liberty for approximately two years, further recapture fishing was carried out and tagged individuals were again measured and returned to the laboratory. Sampling in 2015 did not record the untagged or notched individuals. At the laboratory, tags were dissected and read under a microscope (25X), individuals were identified and their starting sizes/final sizes compared to enable growth to be calculated.  Acoustic data were collected using the Biosonics echosounder on the 21st and 22nd of July 2014 at depths varying from 2.8-23.1 m across the greater Study Area (Fig. 2). A battery was used onboard to provide a consistent power supply to allow collection of acoustic data with minimal noise and interference. The transducer was mounted on a pole attached to the transom of a 6 m rib and towed at a running depth of approximately 1 m at a speed of 4-5 knots. Navigation data was supplied by a Garmin echosounder using DGPS with an update rate of 1 second. Parallel tracks were run from west to east along the study site with a typical depth between 8 and 16 m. Every effort was made to keep the engine revolutions per minute (RPM) constant since the engine noise can influence the echogram. An unsupervised categorisation of 5 classes was chosen to represent a good balance between likely sediment classes and overfitting the noise in the data.

Sedimentology. Sediments analysis was compliant with the North East Atlantic Marine Biological
Analytical Quality Control scheme (NMBAQCS). Ground-truthing (i.e. sediment size categorisation) of acoustic data was carried out in August 2014 at 22 stations (Fig. 2). At each station, sediment was sampled with a single grab sample (0.1 m 2 Van Veen grab). Visual inspection confirmed the presence of larger particulates in the sediment samples which means that samples were split and analysed with a combination of laser particle sizing (LPS) by means of laser diffraction, as well as by and wet and dry sieving (WDS). All samples were homogenised before analysis. Samples were halved and the first portion was analysed by the WDS method of 26 . This involved oven drying the entire portion of the sediment at 100 °C for 24 h and weighing to get a dry weight. This was followed by addition of 10 ml of 1% solution of sodium hexametaphosphate (NaPO 3 ) 6 , which aids dispersion of the clay particles. The sediment suspension was then stirred for 10 minutes using a mechanical stirrer before being left to stand overnight. On the following day the mixture was stirred again for 10 min and then sieved through a 500 micron (μm) mesh sieve to remove the fine fraction. The coarser fraction remaining on the mesh was rinsing thoroughly with fresh water to remove the dispersion agent. This sediment was dried again for another 24 hours at 100 °C. The sediment distributions coarser than 500 μm of the oven dried samples were determined by dry sieving. A www.nature.com/scientificdata/ collecting pan and a series of Phi Wentworth sieves (ranging from 4 mm to 500 μm) were stacked and loaded with dried material, with each sample left in an automated mechanical shaker for 10 minutes. Following shaking, all contents were brushed out of sieves and weighed separately. The fraction of sediment finer than 500 µm was determined by subtraction. The particle size distribution of the sediment <500 µm was determined using the LPS method of 27 . For each sediment sample, three replicate aliquots of the <500 μm fraction were analysed using a Malvern Mastersizer 2000 with a Hydro-G dispersion unit (Malvern Instruments Ltd, UK.). Sediment was added to the dispersion unit until obscuration reached between 15% and 18%. For each aliquot, the measurement cycle was 3 × 30,000 scans. The <500 µm LPS data for the replicate aliquots were averaged and converted to whole phi size class equivalents (500 to 250 µm, 250 to 125 µm, 125 to 63 µm, <63 µm) using GRADISTAT v8.0© statistical package 28 . The two data sets were then merged. The LPS data was normalised to the <500 μm WDS sieve percentage and then combined with the > 500 μm sieve fractions. The merged LPS and WDS distribution data were expressed as percentage weights within full Phi classes ranging between 4 and −2 Phi units (<63 μm to >4 mm) 28 . These data were processed using GRADISTAT and software output provided the percentage of the sediment in standard sediment size categories such as sand, silt, clay and gravel using conventional Folk sediment classes 28,29 as well as sediment size statistics such as mean size, degree of homogeneity, and degree of sorting via skew and kurtosis of the size distribution.

Data Records
Detailed explanation of dataset "N. norvegicus sampling" 21 is given in Table 1.
The first dataset (N. norvegicus sampling 21 ) consists of: The measurement of the carapace from eye socket to rear end of the cephalic shield (mm). U indicates there was a catch but Carapace Length was not recorded. NA indicates no data available as pot had no catch  . ID refers to a unique identifier for each pot that was fished with information about the number of the fishing day, followed by the number of the string which contained pots, followed by the number of the pot; hence 1.1.1 means the first fishing day, the first string and the first pot on that string. (In this case 2 individual N. norvegicus were captured within the 1.1.1 pot). 8. Given that the population was sampled 14 times in 2014, and many individuals were neither tagged nor v-notched, unmarked individuals could be present more than once in the dataset. 9. Latitude/longitude co-ordinates are given as easting (X) and northing (Y) representing easting (X) and northing (Y) according to the Irish Transverse Mercator projection. 10. F means female, M means male, N means no/none, NA means no data available, and U means unknown. 11. When a pot had no catch, NA was recorded for Carapace Length.
Detailed explanation of dataset "Acoustic data" 21 is given in Table 2. The second dataset "Acoustic data" 21  Detailed explanation of dataset "Sedimentology" 21 is given in Table 3. The third dataset "Sedimentology" 21 consists of: 1. Mean sediment sizes for 22 grab samples which ranged from 'very coarse silt' (37.92-58.07 μm) to 'coarse sand' (554.4-799.9 μm) according to Folk and Ward categories 29 , along with sediment sorting, skew and kurtosis, described in both numeric and text typologies. 2. Percentage of the sediment in each grab sample which fell into a graded series of mud, sand and gravel classes. 3. Spatial positions for grabs in X, Y coordinates, as before (see N. norvegicus sampling).

Technical Validation
Fishing was always carried out in conditions 'suitable' for fishing (in less than Beaufort Scale 4). To quality control tagging procedures, all individuals were scanned immediately after tagging to ensure the tag was indeed present and any individuals which did not have a tag present, for some reason, were re-tagged or rejected. Tagged individuals were held for several days afterwards, to ensure that they were in good condition and that they bore the tagging procedure well, before being scanned once again prior to controlled release into the wild. In order to investigate any negative effects of the tags, particularly on growth, an extra 232 individuals were held for 12 months at an aquaculture facility. Tags caused no negative effects on growth or mortality compared with a control group 30 . Also, scanning checks for tag retention in a captive tagged population 30 were made approximately bi-monthly. These checks indicated that, once initial retention was good, tags were rarely if ever lost thereafter.
During the acoustic classification of bottom types, the number of bottom types was chosen to correspond to the number of categories for which ground-truthed samples were available, i.e. 5.

Usage Notes
Data are provided in CSV format. Care should be taken with conversion of columns containing DD/MM/YYYY data from csv files. Precise coordinates of the studied N. norvegicus are not shown to protect anonymity of the fishing grounds; however the spatial offset used for all latitude/longitude co-ordinates is the same to allow datasets to be overlain spatially. All spatial coordinates are given as X, Y using the Irish Transverse Mercator projection. A conversion to other projections can be done using Geographic Information System software such as QGIS. Lincoln-Petersen mark-recapture methods may also be used for density calculations within the fishing grounds 22,23 . CPUE may be estimated from data via the ratio of (re)captured N. norvegicus density and pot density, both resulting from a 2-D kernel density estimator. Farmer 31 provides a conversion between Carapace Length and Total Body Length.