G protein–coupled receptors (GPCRs) are important pharmaceutical targets. Knowledge of their 3D structures is critical to understanding mechanisms of drug action. Low cellular expression, purification yield, and in vitro instability are substantial hurdles to the successful determination of GPCR structure. Intense effort is required to optimize a receptor’s protein sequence and purification procedure, increasing the complexity of the precrystallization process. Here, we present a procedure for a small-scale precrystallization screen that involves detecting GPCR expression levels in Spodoptera frugiperda (Sf9) culture by flow cytometry and evaluating GPCR stability by size-exclusion chromatography and UV absorbance measurements. The example procedure uses the smallest volumes of Sf9 cell culture that will yield sufficient quantities of purified protein for intrinsic UV absorbance analysis and is amenable to medium throughput with the same constructs and conditions that would be scaled up for crystallization trials. The protocol takes 8 d to complete and requires expertise in cell culture, protein purification, and chromatography.
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The datasets generated and analyzed here are available from the authors upon request.
Santos, R. et al. A comprehensive map of molecular drug targets. Nat. Rev. Drug Discov. 16, 19–34 (2016).
Sriram, K. & Insel, P. A. G protein-coupled receptors as targets for approved drugs: how many targets and how many drugs? Mol. Pharmacol. 93, 251–258 (2018).
Xiang, J. et al. Successful strategies to determine high-resolution structures of GPCRs. Trends Pharmacol. Sci. 37, 1055–1069 (2016).
Audet, M. & Stevens, R. C. Emerging structural biology of lipid G protein-coupled receptors. Protein Sci. 28, 292–304 (2019).
Audet, M. et al. Crystal structure of misoprostol bound to the labor inducer prostaglandin E2 receptor. Nat. Chem. Biol. 15, 11–17 (2019).
Li, X. et al. Crystal structure of the human cannabinoid receptor CB2. Cell 176, 459–467.e413 (2019).
Hua, T. et al. Crystal structures of agonist-bound human cannabinoid receptor CB1. Nature 547, 468–471 (2017).
Shao, Z. et al. High-resolution crystal structure of the human CB1 cannabinoid receptor. Nature 540, 602–606 (2016).
Hua, T. et al. Crystal structure of the human cannabinoid receptor CB1. Cell 167, 750–762.e714 (2016).
Wacker, D. et al. Crystal structure of an LSD-bound human serotonin receptor. Cell 168, 377–389.e312 (2017).
Kumar, A. & Plückthun, A. In vivo assembly and large-scale purification of a GPCR - Gα fusion with Gβγ, and characterization of the active complex. PloS one 14, e0210131 (2019).
Thal, D. M., Glukhova, A., Sexton, P. M. & Christopoulos, A. Structural insights into G-protein-coupled receptor allostery. Nature 559, 45–53 (2018).
Yang, S. et al. Crystal structure of the Frizzled 4 receptor in a ligand-free state. Nature 560, 666–670 (2018).
René, P. et al. Pharmacological chaperones restore function to MC4R mutants responsible for severe early-onset obesity. J. Pharmacol. Exp. Ther. 335, 520–532 (2010).
Morello, J. P. et al. Pharmacological chaperones rescue cell-surface expression and function of misfolded V2 vasopressin receptor mutants. J. Clin. Invest. 105, 887–895 (2000).
Lyons, J. A., Shahsavar, A., Paulsen, P. A., Pedersen, B. P. & Nissen, P. Expression strategies for structural studies of eukaryotic membrane proteins. Curr. Opin. Struct. Biol. 38, 137–144 (2016).
Elegheert, J. et al. Lentiviral transduction of mammalian cells for fast, scalable and high-level production of soluble and membrane proteins. Nat. Protoc. 13, 2991–3017 (2018).
Chen, H., Shaffer, P. L., Huang, X. & Rose, P. E. Rapid screening of membrane protein expression in transiently transfected insect cells. Protein Expr. Purif. 88, 134–142 (2013).
Suzuki, N. et al. An efficient screening method for purifying and crystallizing membrane proteins using modified clear-native PAGE. Anal. Biochem. 548, 7–14 (2018).
Hattori, M., Hibbs, R. E. & Gouaux, E. A fluorescence-detection size-exclusion chromatography-based thermostability assay for membrane protein precrystallization screening. Structure 20, 1293–1299 (2012).
Kawate, T. & Gouaux, E. Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins. Structure 14, 673–681 (2006).
Shiroishi, M. et al. Platform for the rapid construction and evaluation of GPCRs for crystallography in Saccharomyces cerevisiae. Microb. Cell Fact. 11, 78–78 (2012).
Li, X. et al. Generation of destabilized green fluorescent protein as a transcription reporter. J. Biol. Chem. 273, 34970–34975 (1998).
Tsien, R. Y. The green fluorescent protein. Ann. Rev. Biochem. 67, 509–544 (1998).
Sokolovski, M., Bhattacherjee, A., Kessler, N., Levy, Y. & Horovitz, A. Thermodynamic protein destabilization by GFP tagging: a case of interdomain allostery. Biophys. J. 109, 1157–1162 (2015).
Rodriguez-Banqueri, A., Kowalczyk, L., Palacin, M. & Vazquez-Ibar, J. L. Assessment of membrane protein expression and stability using a split green fluorescent protein reporter. Anal. Biochem. 423, 7–14 (2012).
Toyoda, Y. et al. Ligand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface. Nat. Chem. Biol. 15, 18–26 (2019).
Alexandrov, A. I., Mileni, M., Chien, E. Y. T., Hanson, M. A. & Stevens, R. C. Microscale fluorescent thermal stability assay for membrane proteins. Structure 16, 351–359 (2008).
Liu, W. et al. Structural basis for allosteric regulation of GPCRs by sodium ions. Science 337, 232–236 (2012).
Gill, J. E., Jotz, M. M., Young, S. G., Modest, E. J. & Sengupta, S. K. 7-Amino-actinomycin D as a cytochemical probe. I. Spectral properties. J. Histochem. Cytochem. 23, 793–799 (1975).
This research was supported by NIH/NIGMS Protein Structure Initiative U54GM094618 (R.C.S.). M.A. was supported by a Canadian Institute of Health and Research (CIHR) Postdoctoral Fellowship Award. We thank A. Walker for assistance in manuscript preparation and F. Badeaux and E. Audet-Badeaux for their support.
The authors declare no competing interests.
Peer review information Nature Protocols thanks Gopala Krishna Aradhyam and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Key reference using this protocol
Audet, M. et al. Nat. Chem. Biol. 15, 11–17 (2019): https://www.nature.com/articles/s41589-018-0160-y
Integrated supplementary information
a, Plot of front scatter (FSC) against side scatter (SSC) signals shows that Sf9 insect cells growth as a homogeneous and monodispersed suspension culture. For GP64-PE and FLAG-FITC experiments, we measured 2000 events that show an FSC signal above 180 counts. We are not gating SSC signal. b, Typical GP64-PE experiment to monitor baculovirus budding on the surface of Sf9 cells after bacmid transfection. Positive GP64-PE signal is set above 20 counts. Non-transfected Sf9 cells are used as a negative control and shown in blue, Sf9 cells transfected with a bacmid containing the coding sequence of A2A-BRIL is shown in magenta. The gate was set at 20 counts for positive GP64-PE signal. c-d, Typical FLAG-FITC experiment to monitor c, cell surface and d, total receptor expression in Sf9 cells after baculovirus infection. Non-infected Sf9 cells are used as negative control and shown in blue. Sf9 cell expressing A2A-BRIL receptor fusion is shown in magenta. The gate was set at 30 counts for positive FLAG-FITC signal for both c, cell surface and d, total receptor expression. The gates are depicted on the graphs as solid lines.
a, n- and b, c-terminal truncations of EP3-rub reference construct. The non-truncated EP3-rub is the isoform D of EP3 receptor fused with a rubredoxin flanked by a Gly-Ser linker on both sides (EP3-rub). The rubredoxin is inserted in the third intracellular loop of EP3 by replacing the receptor residues 260-267. A FLAG-tag and a 10 x his-tag were fused at both n- and c-terminus respectively. EP3 receptor residue number are indicated above each cartoon.
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Audet, M., Villers, K., Velasquez, J. et al. Small-scale approach for precrystallization screening in GPCR X-ray crystallography. Nat Protoc 15, 144–160 (2020). https://doi.org/10.1038/s41596-019-0259-y
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