trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data

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Fig. 1: Examples to illustrate how trackViewer can be used for integrative visualization of multi-omics data.

Data availability

All datasets analyzed during this work are publicly available and are described in detail in Supplementary Note 6. In addition, we have created a Docker image that contains all data and scripts necessary for users to reproduce the figures as either static or interactive (Supplementary Note 2).

Code availability

trackViewer is freely available at https://bioconductor.org/packages/release/bioc/html/trackViewer.html. To make it easy to install and run, we have created a Docker image with trackViewer, RStudio, and all its R and system dependencies already installed (https://github.com/jianhong/trackViewer.documentation). In addition, the Docker image contains all data and scripts necessary for users to reproduce the figures as either static or interactive (Supplementary Note 2). Supplementary Note 7 provides step-by-step instructions on how to install and run the web application of trackViewer, with four examples.

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Acknowledgements

We thank S. Han for editorial and web design assistance, and L. Ni and J. Yu for helpful discussion. L.J.Z. is partially supported by the NIH/NIDDK (grant R01DK076118).

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Authors

Contributions

J.O. developed the software and generated Fig. 1 with input from L.J.Z. L.J.Z. drafted the manuscript with input from J.O. Both authors read and approved the final manuscript.

Corresponding authors

Correspondence to Jianhong Ou or Lihua Julie Zhu.

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Competing interests

The authors declare no competing interests.

Supplementary information

Supplementary Information

Supplementary Notes 1–7

Reporting Summary

Supplementary Video 1

Generate and modify the interactive plot in Fig. 1a using trackViewer.

Supplementary Video 2

Generate and modify the interactive plot in Fig. 1b using trackViewer.

Supplementary Video 3

Generate and modify the interactive plot in Fig. 1c using trackViewer.

Supplementary Video 4

Generate and modify the interactive plot in Fig. 1d using trackViewer.

Supplementary Video 5

How to use the web interface of the Bioconductor package trackViewer.

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Ou, J., Zhu, L.J. trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data. Nat Methods 16, 453–454 (2019). https://doi.org/10.1038/s41592-019-0430-y

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