Fig. 1: Overview of the scRNA-seq mixology experimental design and benchmark analysis. | Nature Methods

Fig. 1: Overview of the scRNA-seq mixology experimental design and benchmark analysis.

From: Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments

Fig. 1

a,b, The benchmark experimental design involving single cells (a) and ‘pseudo cells’ (b). c, PCA plots from representative datasets for each design (normalized using scran) highlight the structure present in each experiment. The percentage of variation explained by each principal component (PC) is included in the respective axis labels, and sample sizes are indicated by n. d, Workflow for benchmarking different analysis tasks using the CellBench R package.

Back to article page