Extended Data Fig. 1: Cell types detected based on scRNA-seq profiling of 175,942 cells. | Nature Medicine

Extended Data Fig. 1: Cell types detected based on scRNA-seq profiling of 175,942 cells.

From: A single-cell map of intratumoral changes during anti-PD1 treatment of patients with breast cancer

Extended Data Fig. 1

a,b, Heatmap (a) and UMAP (b) showing the expression of 3 marker genes for each cell type. c, CNV profile in cancer versus stromal cells assessed using InferCNV based on scRNA-seq. d-f, UMAP and barplots color-coded for individual patients (d), pre- versus on-treatment biopsies (e) and BC subtype (f) showing their distribution across cell types. pDC: plasmacytoid dendritic cell; CNV: copy number variation.

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